element search_program
diagram proxl-xml-v1.4_diagrams/proxl-xml-v1.4_p52.png
properties
content complex
children psm_annotation_types reported_peptide_annotation_types
used by
element search_programs
attributes
Name  Type  Use  Default  Fixed  Annotation
name  xs:string  required      
documentation
The name of the search program, e.g., "Kojak" or "XQuest" Used to reference this search program in this document.
display_name          
documentation
If present, the value for this attribute will be used to display the name of this program in the web site. If abscent the value for "name" will be used.
version  xs:string  required      
documentation
The version of the above program that was run to generate these results.
description  xs:string        
documentation
(Optional) A description of the search program.
annotation
documentation
A search program, such as Kojak or XQuest
source <xs:element name="search_program">
 
<xs:annotation>
   
<xs:documentation>A search program, such as Kojak or XQuest</xs:documentation>
 
</xs:annotation>
 
<xs:complexType>
   
<xs:sequence>
     
<xs:element name="psm_annotation_types">
       
<xs:annotation>
         
<xs:documentation>The types of annotations this search program has for PSMs--such as quality scores.</xs:documentation>
       
</xs:annotation>
       
<xs:complexType>
         
<xs:sequence>
           
<xs:element ref="filterable_psm_annotation_types"/>
           
<xs:element ref="descriptive_psm_annotation_types" minOccurs="0"/>
         
</xs:sequence>
       
</xs:complexType>
     
</xs:element>
     
<xs:element name="reported_peptide_annotation_types" minOccurs="0">
       
<xs:annotation>
         
<xs:documentation>The types of annotations this search program may have at the reported peptide level.</xs:documentation>
       
</xs:annotation>
       
<xs:complexType>
         
<xs:sequence>
           
<xs:element ref="filterable_peptide_annotation_types" minOccurs="0"/>
           
<xs:element ref="descriptive_peptide_annotation_types" minOccurs="0"/>
         
</xs:sequence>
       
</xs:complexType>
     
</xs:element>
   
</xs:sequence>
   
<xs:attribute name="name" type="xs:string" use="required">
     
<xs:annotation>
       
<xs:documentation>The name of the search program, e.g., "Kojak" or "XQuest" Used to reference this search program in this document.</xs:documentation>
     
</xs:annotation>
   
</xs:attribute>
   
<xs:attribute name="display_name">
     
<xs:annotation>
       
<xs:documentation>If present, the value for this attribute will be used to display the name of this program in the web site. If abscent the value for "name" will be used.</xs:documentation>
     
</xs:annotation>
   
</xs:attribute>
   
<xs:attribute name="version" type="xs:string" use="required">
     
<xs:annotation>
       
<xs:documentation>The version of the above program that was run to generate these results.</xs:documentation>
     
</xs:annotation>
   
</xs:attribute>
   
<xs:attribute name="description" type="xs:string">
     
<xs:annotation>
       
<xs:documentation>(Optional) A description of the search program.</xs:documentation>
     
</xs:annotation>
   
</xs:attribute>
 
</xs:complexType>
</xs:element>

attribute search_program/@name
type xs:string
properties
use required
annotation
documentation
The name of the search program, e.g., "Kojak" or "XQuest" Used to reference this search program in this document.
source <xs:attribute name="name" type="xs:string" use="required">
 
<xs:annotation>
   
<xs:documentation>The name of the search program, e.g., "Kojak" or "XQuest" Used to reference this search program in this document.</xs:documentation>
 
</xs:annotation>
</xs:attribute>

attribute search_program/@display_name
annotation
documentation
If present, the value for this attribute will be used to display the name of this program in the web site. If abscent the value for "name" will be used.
source <xs:attribute name="display_name">
 
<xs:annotation>
   
<xs:documentation>If present, the value for this attribute will be used to display the name of this program in the web site. If abscent the value for "name" will be used.</xs:documentation>
 
</xs:annotation>
</xs:attribute>

attribute search_program/@version
type xs:string
properties
use required
annotation
documentation
The version of the above program that was run to generate these results.
source <xs:attribute name="version" type="xs:string" use="required">
 
<xs:annotation>
   
<xs:documentation>The version of the above program that was run to generate these results.</xs:documentation>
 
</xs:annotation>
</xs:attribute>

attribute search_program/@description
type xs:string
annotation
documentation
(Optional) A description of the search program.
source <xs:attribute name="description" type="xs:string">
 
<xs:annotation>
   
<xs:documentation>(Optional) A description of the search program.</xs:documentation>
 
</xs:annotation>
</xs:attribute>

element search_program/psm_annotation_types
diagram proxl-xml-v1.4_diagrams/proxl-xml-v1.4_p53.png
properties
content complex
children filterable_psm_annotation_types descriptive_psm_annotation_types
annotation
documentation
The types of annotations this search program has for PSMs--such as quality scores.
source <xs:element name="psm_annotation_types">
 
<xs:annotation>
   
<xs:documentation>The types of annotations this search program has for PSMs--such as quality scores.</xs:documentation>
 
</xs:annotation>
 
<xs:complexType>
   
<xs:sequence>
     
<xs:element ref="filterable_psm_annotation_types"/>
     
<xs:element ref="descriptive_psm_annotation_types" minOccurs="0"/>
   
</xs:sequence>
 
</xs:complexType>
</xs:element>

element search_program/reported_peptide_annotation_types
diagram proxl-xml-v1.4_diagrams/proxl-xml-v1.4_p54.png
properties
minOcc 0
maxOcc 1
content complex
children filterable_peptide_annotation_types descriptive_peptide_annotation_types
annotation
documentation
The types of annotations this search program may have at the reported peptide level.
source <xs:element name="reported_peptide_annotation_types" minOccurs="0">
 
<xs:annotation>
   
<xs:documentation>The types of annotations this search program may have at the reported peptide level.</xs:documentation>
 
</xs:annotation>
 
<xs:complexType>
   
<xs:sequence>
     
<xs:element ref="filterable_peptide_annotation_types" minOccurs="0"/>
     
<xs:element ref="descriptive_peptide_annotation_types" minOccurs="0"/>
   
</xs:sequence>
 
</xs:complexType>
</xs:element>


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