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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.597301811295]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

DNA polymerase complex 2.2737E-6 2 10 2 6292
zeta DNA polymerase complex 6.3568E-4 2 2 1 6292
epsilon DNA polymerase complex 1.5888E-3 2 5 1 6292
nuclear replisome 5.7138E-3 2 18 1 6292
replisome 5.7138E-3 2 18 1 6292
nuclear replication fork 6.3477E-3 2 20 1 6292
nucleotide-excision repair complex 6.6645E-3 2 21 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

DNA repair 9.2646E-4 2 192 2 6292
response to DNA damage stimulus 1.4011E-3 2 236 2 6292
cellular response to stress 2.1173E-3 2 290 2 6292
mutagenesis 2.859E-3 2 9 1 6292
cellular response to stimulus 3.6193E-3 2 379 2 6292
leading strand elongation 4.7627E-3 2 15 1 6292
lagging strand elongation 5.7138E-3 2 18 1 6292
response to stress 6.2277E-3 2 497 2 6292
mismatch repair 8.5646E-3 2 27 1 6292
DNA metabolic process 8.631E-3 2 585 2 6292
DNA strand elongation 9.8303E-3 2 31 1 6292
DNA strand elongation involved in DNA replication 9.8303E-3 2 31 1 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

DNA-directed DNA polymerase activity 3.0291E-4 2 110 2 6292
DNA polymerase activity 3.312E-4 2 115 2 6292
nucleotidyltransferase activity 7.0879E-4 2 168 2 6292
transferase activity, transferring phosphorus-containing groups 4.4459E-3 2 420 2 6292
double-stranded DNA binding 7.2981E-3 2 23 1 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle