| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.054] [SVM Score: 0.595439639103] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| endoplasmic reticulum membrane | 4.4352E-4 | 2 | 133 | 2 | 6292 |
| endoplasmic reticulum part | 5.6464E-4 | 2 | 150 | 2 | 6292 |
| subsynaptic reticulum | 5.6464E-4 | 2 | 150 | 2 | 6292 |
| UDP-N-acetylglucosamine transferase complex | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| extrinsic to endoplasmic reticulum membrane | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| nuclear membrane-endoplasmic reticulum network | 1.3539E-3 | 2 | 232 | 2 | 6292 |
| endoplasmic reticulum | 3.3381E-3 | 2 | 364 | 2 | 6292 |
| extrinsic to organelle membrane | 3.811E-3 | 2 | 12 | 1 | 6292 |
| endomembrane system | 3.9918E-3 | 2 | 398 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| dolichol-linked oligosaccharide biosynthetic process | 2.2737E-6 | 2 | 10 | 2 | 6292 |
| oligosaccharide biosynthetic process | 6.0632E-6 | 2 | 16 | 2 | 6292 |
| oligosaccharide metabolic process | 1.9099E-5 | 2 | 28 | 2 | 6292 |
| protein amino acid N-linked glycosylation | 5.9419E-5 | 2 | 49 | 2 | 6292 |
| protein amino acid glycosylation | 1.4021E-4 | 2 | 75 | 2 | 6292 |
| glycosylation | 1.4021E-4 | 2 | 75 | 2 | 6292 |
| macromolecule glycosylation | 1.4021E-4 | 2 | 75 | 2 | 6292 |
| glycoprotein biosynthetic process | 1.6371E-4 | 2 | 81 | 2 | 6292 |
| glycoprotein metabolic process | 1.7194E-4 | 2 | 83 | 2 | 6292 |
| carbohydrate biosynthetic process | 2.0691E-4 | 2 | 91 | 2 | 6292 |
| cellular carbohydrate metabolic process | 1.7276E-3 | 2 | 262 | 2 | 6292 |
| carbohydrate metabolic process | 1.9877E-3 | 2 | 281 | 2 | 6292 |
| protein modification process | 6.278E-3 | 2 | 499 | 2 | 6292 |
| macromolecule modification | 8.1649E-3 | 2 | 569 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| transferase activity, transferring hexosyl groups | 1.5966E-4 | 2 | 80 | 2 | 6292 |
| transferase activity, transferring glycosyl groups | 2.7062E-4 | 2 | 104 | 2 | 6292 |
| dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| acetylglucosaminyltransferase activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| glucosyltransferase activity | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| UDP-glycosyltransferase activity | 8.5646E-3 | 2 | 27 | 1 | 6292 |