From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classfier did not use Gene Ontology annotations. [FDR: 0.021] [SVM Score: 0.756733380741] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
MAK5 |
|
|
|
PRP16 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
ribonucleoprotein complex assembly | 2.1151E-4 | 2 | 92 | 2 | 6292 |
cellular macromolecular complex assembly | 8.3223E-4 | 2 | 182 | 2 | 6292 |
generation of catalytic spliceosome for second transesterification step | 1.5888E-3 | 2 | 5 | 1 | 6292 |
cellular macromolecular complex subunit organization | 1.6882E-3 | 2 | 259 | 2 | 6292 |
macromolecular complex assembly | 1.9877E-3 | 2 | 281 | 2 | 6292 |
spliceosomal conformational changes to generate catalytic conformation | 2.859E-3 | 2 | 9 | 1 | 6292 |
macromolecular complex subunit organization | 3.2108E-3 | 2 | 357 | 2 | 6292 |
ribonucleoprotein complex biogenesis | 3.5243E-3 | 2 | 374 | 2 | 6292 |
RNA processing | 3.6384E-3 | 2 | 380 | 2 | 6292 |
cellular component assembly | 3.7349E-3 | 2 | 385 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
ATP-dependent RNA helicase activity | 1.9099E-5 | 2 | 28 | 2 | 6292 |
RNA-dependent ATPase activity | 2.0514E-5 | 2 | 29 | 2 | 6292 |
RNA helicase activity | 4.3504E-5 | 2 | 42 | 2 | 6292 |
ATP-dependent helicase activity | 5.6994E-5 | 2 | 48 | 2 | 6292 |
purine NTP-dependent helicase activity | 5.6994E-5 | 2 | 48 | 2 | 6292 |
helicase activity | 1.7194E-4 | 2 | 83 | 2 | 6292 |
ATPase activity, coupled | 5.5711E-4 | 2 | 149 | 2 | 6292 |
ATPase activity | 1.1194E-3 | 2 | 211 | 2 | 6292 |
nucleoside-triphosphatase activity | 2.7262E-3 | 2 | 329 | 2 | 6292 |
hydrolase activity, acting on acid anhydrides | 3.1391E-3 | 2 | 353 | 2 | 6292 |
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 3.1391E-3 | 2 | 353 | 2 | 6292 |
pyrophosphatase activity | 3.1391E-3 | 2 | 353 | 2 | 6292 |