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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 1.34193467656]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
OST1
  • oligosaccharyltransferase complex
    		•
  • protein amino acid N-linked glycosylation
  • protein amino acid N-linked glycosylation via asparagine
    		•
  • dolichyl-diphosphooligosaccharide-protein glycotransferase activity
    		•
    SWP1
  • oligosaccharyltransferase complex
    		•
  • protein amino acid N-linked glycosylation
    		•
  • dolichyl-diphosphooligosaccharide-protein glycotransferase activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    oligosaccharyltransferase complex 2.2737E-6 2 10 2 6292
    endoplasmic reticulum membrane 4.4352E-4 2 133 2 6292
    endoplasmic reticulum part 5.6464E-4 2 150 2 6292
    subsynaptic reticulum 5.6464E-4 2 150 2 6292
    nuclear membrane-endoplasmic reticulum network 1.3539E-3 2 232 2 6292
    endoplasmic reticulum 3.3381E-3 2 364 2 6292
    endomembrane system 3.9918E-3 2 398 2 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    protein amino acid N-linked glycosylation 5.9419E-5 2 49 2 6292
    protein amino acid glycosylation 1.4021E-4 2 75 2 6292
    glycosylation 1.4021E-4 2 75 2 6292
    macromolecule glycosylation 1.4021E-4 2 75 2 6292
    glycoprotein biosynthetic process 1.6371E-4 2 81 2 6292
    glycoprotein metabolic process 1.7194E-4 2 83 2 6292
    peptidyl-asparagine modification 6.3568E-4 2 2 1 6292
    protein amino acid N-linked glycosylation via asparagine 6.3568E-4 2 2 1 6292
    cellular carbohydrate metabolic process 1.7276E-3 2 262 2 6292
    carbohydrate metabolic process 1.9877E-3 2 281 2 6292
    protein modification process 6.278E-3 2 499 2 6292
    macromolecule modification 8.1649E-3 2 569 2 6292
    peptidyl-amino acid modification 8.5646E-3 2 27 1 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    dolichyl-diphosphooligosaccharide-protein glycotransferase activity 2.2737E-6 2 10 2 6292
    oligosaccharyl transferase activity 2.2737E-6 2 10 2 6292
    transferase activity, transferring hexosyl groups 1.5966E-4 2 80 2 6292
    transferase activity, transferring glycosyl groups 2.7062E-4 2 104 2 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle