| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.823521601049] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| vacuolar membrane | 3.1973E-4 | 2 | 113 | 2 | 6292 |
| vacuolar part | 3.6682E-4 | 2 | 121 | 2 | 6292 |
| vacuole | 1.0983E-3 | 2 | 209 | 2 | 6292 |
| integral to plasma membrane | 9.1975E-3 | 2 | 29 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| carboxylic acid transport | 8.6451E-5 | 2 | 59 | 2 | 6292 |
| organic acid transport | 8.9432E-5 | 2 | 60 | 2 | 6292 |
| cation transport | 2.256E-4 | 2 | 95 | 2 | 6292 |
| betaine transport | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| carnitine transport | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| ion transport | 3.6076E-4 | 2 | 120 | 2 | 6292 |
| quaternary ammonium group transport | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| cadmium ion transport | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| bilirubin transport | 6.3568E-4 | 2 | 2 | 1 | 6292 |
| organic cation transport | 2.5415E-3 | 2 | 8 | 1 | 6292 |
| vitamin transport | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| cofactor transport | 3.811E-3 | 2 | 12 | 1 | 6292 |
| monocarboxylic acid transport | 4.4455E-3 | 2 | 14 | 1 | 6292 |
| polyamine transport | 4.4455E-3 | 2 | 14 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.