| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.811561530064] |
| Complex Size: | 2 proteins |
| Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
| TLG1 |
|
|
|
| VTI1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| Golgi apparatus part | 3.5475E-4 | 2 | 119 | 2 | 6292 |
| Golgi apparatus | 7.3441E-4 | 2 | 171 | 2 | 6292 |
| Golgi trans cisterna | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| early endosome | 1.5888E-3 | 2 | 5 | 1 | 6292 |
| trans-Golgi network | 4.1283E-3 | 2 | 13 | 1 | 6292 |
| integral to Golgi membrane | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| Golgi stack | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| intrinsic to Golgi membrane | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| Golgi cisterna | 5.0798E-3 | 2 | 16 | 1 | 6292 |
| organelle subcompartment | 5.0798E-3 | 2 | 16 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| vesicle fusion | 2.0514E-5 | 2 | 29 | 2 | 6292 |
| vesicle organization | 5.2295E-5 | 2 | 46 | 2 | 6292 |
| organelle fusion | 7.2304E-5 | 2 | 54 | 2 | 6292 |
| membrane fusion | 1.1171E-4 | 2 | 67 | 2 | 6292 |
| cellular membrane fusion | 1.1171E-4 | 2 | 67 | 2 | 6292 |
| lysosomal transport | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| endosome to lysosome transport | 3.1786E-4 | 2 | 1 | 1 | 6292 |
| membrane organization | 9.8542E-4 | 2 | 198 | 2 | 6292 |
| cellular membrane organization | 9.8542E-4 | 2 | 198 | 2 | 6292 |
| vesicle-mediated transport | 2.9119E-3 | 2 | 340 | 2 | 6292 |
| intra-Golgi vesicle-mediated transport | 6.9813E-3 | 2 | 22 | 1 | 6292 |
| Golgi to vacuole transport | 7.6148E-3 | 2 | 24 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| receptor signaling protein serine/threonine kinase activity | 3.1832E-5 | 2 | 36 | 2 | 6292 |
| receptor signaling protein activity | 3.3651E-5 | 2 | 37 | 2 | 6292 |
| molecular transducer activity | 1.5966E-4 | 2 | 80 | 2 | 6292 |
| signal transducer activity | 1.5966E-4 | 2 | 80 | 2 | 6292 |
| protein serine/threonine kinase activity | 2.0691E-4 | 2 | 91 | 2 | 6292 |
| protein kinase activity | 6.1087E-4 | 2 | 156 | 2 | 6292 |
| phosphotransferase activity, alcohol group as acceptor | 9.8542E-4 | 2 | 198 | 2 | 6292 |
| kinase activity | 1.2395E-3 | 2 | 222 | 2 | 6292 |
| transferase activity, transferring phosphorus-containing groups | 4.4459E-3 | 2 | 420 | 2 | 6292 |