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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.038] [SVM Score: 0.669188794881]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
TRM1
  • nuclear envelope
  • nuclear inner membrane
  • mitochondrion
    		•
  • ribosome biogenesis
  • tRNA methylation
    		•
  • tRNA (guanine-N2-)-methyltransferase activity
    		•
    TRM112
  • nucleus
  • cytoplasm
  • nucleolus
    		•
  • tRNA methylation
    		•
  • zinc ion binding
  • tRNA (guanine-N2-)-methyltransferase activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    nuclear inner membrane 3.4937E-3 2 11 1 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    tRNA methylation 5.3053E-6 2 15 2 6292
    RNA methylation 8.6401E-6 2 19 2 6292
    macromolecule methylation 4.5626E-5 2 43 2 6292
    methylation 4.5626E-5 2 43 2 6292
    tRNA modification 6.4422E-5 2 51 2 6292
    one-carbon metabolic process 7.5032E-5 2 55 2 6292
    RNA modification 1.2202E-4 2 70 2 6292
    tRNA processing 1.7194E-4 2 83 2 6292
    tRNA metabolic process 3.6076E-4 2 120 2 6292
    ncRNA processing 1.1624E-3 2 215 2 6292
    ncRNA metabolic process 1.6621E-3 2 257 2 6292
    RNA processing 3.6384E-3 2 380 2 6292
    macromolecule modification 8.1649E-3 2 569 2 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    tRNA (guanine-N2-)-methyltransferase activity 1.5158E-7 2 3 2 6292
    tRNA (guanine) methyltransferase activity 1.4147E-6 2 8 2 6292
    tRNA methyltransferase activity 6.8716E-6 2 17 2 6292
    N-methyltransferase activity 1.5158E-5 2 25 2 6292
    RNA methyltransferase activity 1.6421E-5 2 26 2 6292
    S-adenosylmethionine-dependent methyltransferase activity 1.1171E-4 2 67 2 6292
    methyltransferase activity 2.304E-4 2 96 2 6292
    transferase activity, transferring one-carbon groups 2.4511E-4 2 99 2 6292
    zinc ion binding 2.5415E-3 2 8 1 6292
    transition metal ion binding 7.6148E-3 2 24 1 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle