DTASelect v1.9 /wfs/bfd/3/nemone/jan2004/kaufman/028 /wfs/bfd/6/dbase/EBI/hmr_yeast5_DM3-1_pombe.fasta SEQUEST 2.7 in SQT format. -o -1 2.0 -2 3.0 -d 0.10 -V 2 true Use criteria 2.0 Minimum +1 XCorr 3.0 Minimum +2 XCorr 3.5 Minimum +3 XCorr 0.1 Minimum DeltCN 1 Minimum charge state 3 Maximum charge state 0.0 Minimum ion proportion 1000 Maximum Sp rank -1.0 Minimum Sp score Include Modified peptide inclusion Any Tryptic status requirement true Multiple, ambiguous IDs allowed Ignore Peptide validation handling XCorr Purge duplicate peptides by protein false Include only loci with unique peptide true Remove subset proteins +YM -N Locus validation handling 0 Minimum modified peptides per locus 10 Minimum redundancy for low coverage loci 2 Minimum peptides per locus Locus Sequence Count Spectrum Count Sequence Coverage Length MolWt pI Validation Status Descriptive Name Unique FileName XCorr DeltCN M+H+ CalcM+H+ TotalIntensity SpRank SpScore IonProportion Redundancy Sequence IPI:IPI00220327.1|SWISS-PROT:P04264|REFS 9 9 21.6% 644 66067 8.1 U Tax_Id=9606 keratin 1 * kaufman028-03.1300.1300.2 4.4632 0.3391 1658.49 1658.768 8513.0 1 1429.2 62.5 1 R.SGGGFSSGSAGIINYQR.R * kaufman028-04.1134.1134.2 4.758 0.3575 1766.43 1766.79 9153.4 1 1801.3 57.9 1 R.FSSCGGGGGSFGAGGGFGSR.S kaufman028-03.1109.1109.2 3.7229 0.2025 1394.28 1394.568 8258.8 1 1048.5 72.7 1 R.TNAENEFVTIKK.D kaufman028-03.0815.0815.2 3.308 0.2029 1125.77 1126.208 7792.7 2 1141.3 77.8 1 K.AEAESLYQSK.Y kaufman028-03.1149.1149.1 2.3249 0.1776 1179.6 1180.303 6586.7 7 439.7 61.1 1 K.YEELQITAGR.H kaufman028-03.0822.0822.3 5.263 0.5213 2384.58 2385.298 10911.2 1 854.5 25.0 1 R.GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR.G kaufman028-03.0819.0819.2 5.5591 0.2937 2384.68 2385.298 7054.4 1 845.3 36.7 1 R.GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR.G kaufman028-03.0822.0822.2 3.0898 0.1933 1590.19 1591.55 10911.2 137 352.0 34.2 1 S.SYGSGGGSYGSGGGGGGGRG.S * kaufman028-04.0890.0890.3 3.5727 0.3566 3313.31 3314.208 9269.3 1 736.5 19.7 1 R.GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR.G IPI:IPI00295684.1|REFSEQ_NP:NP_000412|TR 7 7 16.6% 584 58827 5.2 U Tax_Id=9606 Keratin 10 kaufman028-06.2659.2659.2 3.0376 0.4393 2099.18 2098.193 8495.2 1 795.5 43.2 1 I.SSSKGSLGGGFSSGGFSGGSFSR.G * kaufman028-05.1743.1743.2 4.2313 0.3973 2344.88 2344.384 8639.2 1 1147.1 44.2 1 R.GSSGGGCFGGSSGGYGGLGGFGGGSFR.G kaufman028-03.1393.1393.1 2.8253 0.2348 1111.28 1110.168 4207.4 1 546.6 75.0 1 K.DAEAWFNEK.S kaufman028-03.1281.1281.2 3.8648 0.2239 1390.98 1391.478 7511.9 1 1419.1 79.2 1 K.QSLEASLAETEGR.Y kaufman028-04.1234.1234.2 3.1205 0.1954 1434.6 1435.623 8266.7 1 1142.6 75.0 1 K.IRLENEIQTYR.S kaufman028-03.0958.0958.2 4.0037 0.1042 1165.98 1166.276 7180.2 2 1412.4 93.8 1 R.LENEIQTYR.S kaufman028-03.0891.0891.2 3.0172 0.2633 1263.28 1263.307 6226.4 2 628.1 61.5 1 R.SLLEGEGSSGGGGR.G IPI:IPI00178198.1|ENSEMBL:ENSP0000032581 2 2 16.3% 215 23530 7.2 U Tax_Id=9606 IPI:IPI00178229.1|ENSEMBL:ENSP0000032583 2 2 15.4% 227 24762 7.7 U Tax_Id=9606 kaufman028-04.1728.1728.2 4.0032 0.4176 1898.44 1899.152 9500.1 1 1728.6 61.8 1 G.EIVLTQSPATLSLSPGER.A kaufman028-04.1026.1026.2 5.2708 0.4097 1878.33 1877.07 8697.4 1 1722.1 68.8 1 K.VYACEVTHQGLSSPVTK.S IPI:IPI00004608.1|SWISS-PROT:P01859|ENSE 2 2 11.0% 326 35885 7.6 U Tax_Id=9606 Ig gamma-2 chain C region IPI:IPI00004618.1|SWISS-PROT:P01861|TREM 2 2 11.0% 327 35941 7.4 U Tax_Id=9606 Ig gamma-4 chain C region kaufman028-03.1341.1341.2 3.7273 0.3391 1425.69 1424.557 8036.3 1 1375.5 69.2 1 R.STSESTAALGCLVK.D kaufman028-04.2190.2190.2 3.146 0.3093 2544.31 2545.681 9706.5 1 1168.9 47.6 1 K.GFYPSDIAVEWESNGQPENNYK.T IPI:IPI00152302.1|SWISS-PROT:P01857|TREM 3 3 10.2% 471 51792 8.3 Y Tax_Id=9606 Hypothetical protein contaminant_NRL_1MCOH 3 3 11.2% 428 46852 8.9 U owl|| Immunoglobulin g1 (igg1) (mcg) with a hinge deletion, chain H... NRL_1MCOH 3 3 11.2% 428 46852 8.9 U owl|| Immunoglobulin g1 (igg1) (mcg) with a hinge deletion, chain H... kaufman028-04.1422.1422.2 3.0181 0.2176 1187.39 1187.381 4101.9 1 669.1 68.2 1 K.GPSVFPLAPSSK.S kaufman028-03.1292.1292.2 3.1415 0.2919 1321.66 1322.467 8186.6 1 1224.8 69.2 1 K.STSGGTAALGCLVK.D kaufman028-04.2190.2190.2 3.146 0.3093 2544.31 2545.681 9706.5 1 1168.9 47.6 1 K.GFYPSDIAVEWESNGQPENNYK.T IPI:IPI00019359.1|SWISS-PROT:P35527|REFS 2 3 9.0% 622 61987 5.2 Y Tax_Id=9606 Keratin, type I cytoskeletal 9 contaminant_KERATIN02 2 3 9.0% 622 61987 5.2 U no description KERATIN02 2 3 9.0% 622 61987 5.2 U no description kaufman028-03.0794.0794.2 3.8824 0.2975 1233.35 1233.283 5293.7 1 1299.2 73.3 1 T.SGGGGGGGLGSGGSIR.S kaufman028-03.0907.0907.3 5.4814 0.4707 3224.4 3225.112 9216.3 1 1351.1 25.0 2 R.GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK.S IPI:IPI00212767.1|SWISS-PROT:P00762|REFS 2 11 8.1% 246 25959 4.9 Y Tax_Id=10116 Ensembl_locations(Chr-bp):4-73426153 Trypsin I, anionic precursor * kaufman028-05.1938.1938.2 5.3086 0.1418 2211.97 2212.424 8873.0 1 2378.3 65.8 8 R.LGEHNINVLEGDEQFINAAK.I * kaufman028-05.1832.1832.3 5.3434 0.111 2212.91 2212.424 9742.7 1 2071.7 42.1 3 R.LGEHNINVLEGDEQFINAAK.I ORFP:YKR009C 2 2 1.4% 900 98703 9.0 M FOX2 SGDID:S0001717, Chr XI from 456692-453990, reverse complement * kaufman028-03.1140.1140.1 2.7682 0.3597 1127.63 1128.357 10023.7 1 1027.2 62.5 1 R.VVVITGAGGGLGK.V * kaufman028-03.1136.1136.2 3.6536 0.2775 1128.34 1128.357 7648.4 1 1887.0 83.3 1 R.VVVITGAGGGLGK.V Proteins Peptide IDs Copies Unfiltered 28152 5208 57383 Redundant 14 29 39 Nonredundant 8 28 38 Classification Nonredundant Proteins Redundant Proteins Unclassified 0 0