YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|2193980, gi\|2...
Organism:	Escherichia coli
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|2193980, gi|2....

Description	E-value	Query Range	Subject Range
gi\|46561786 - gi\|46561786\|gb\|AAT01110.1\| transcriptional regulator AraC [rpL23-fusion expression vector pGFP] gi\|110227283 - gi\|110227283\|gb\|ABG56581.1\| araC [Shuttle vector pMQ78] gi\|46561782 - gi\|46561782\|gb\|AAT01107.1\| transcriptional regulator AraC [rpL23-fusion expression vector pmIL-6] gi\|110227290 - gi\|110227290\|gb\|ABG56587.1\| AraC [Shuttle vector pMQ79] gi\|46561794 - gi\|46561794\|gb\|AAT01116.1\| transcriptional regulator AraC [rpL23-fusion expression vector pSA] gi\|110227271 - gi\|110227271\|gb\|ABG56571.1\| AraC [Shuttle vector pMQ72] gi\|46561789 - gi\|46561789\|gb\|AAT01112.1\| transcriptional regulator AraC [Expression vector prpL23] gi\|110227277 - gi\|110227277\|gb\|ABG56576.1\| AraC [Shuttle vector pMQ91] gi\|110227260 - gi\|110227260\|gb\|ABG56562.1\| AraC [Shuttle vector pMQ70] gi\|110227266 - gi\|110227266\|gb\|ABG56567.1\| AraC [Shuttle vector pMQ71] gi\|46561778 - gi\|46561778\|gb\|AAT01104.1\| transcriptional regulator AraC [rpL23-fusion expression vector pyEF1A] gi\|73761251 - gi\|73761251\|gb\|AAZ83196.1\| AraC [Cloning vector pBMTB-6] gi\|73761257 - gi\|73761257\|gb\|AAZ83201.1\| AraC [Cloning vector pBTB-6] gi\|22074790 - gi\|22074790\|gb\|AAM63382.1\| transcriptional regulator AraC [Broad host range vector pMLBAD] gi\|110227308 - gi\|110227308\|gb\|ABG56602.1\| AraC [Shuttle vector pMQ97] gi\|46561798 - gi\|46561798\|gb\|AAT01119.1\| transcriptional regulator AraC [rpL23-fusion expression vector pScFV] gi\|110227296 - gi\|110227296\|gb\|ABG56592.1\| AraC [Shuttle vector pMQ80] gi\|110227302 - gi\|110227302\|gb\|ABG56597.1\| AraC [Shuttle vector pMQ95] gi\|254037480, gi... - gi\|254037480\|ref\|ZP_04871557.1\| arabinose operon regulatory protein [Escherichia sp. 1_1_43], gi\|226... gi\|69048160 - gi\|69048160\|gb\|AAY99700.1\| AraC [Broad host range vector pBMTB-1] gi\|69048180 - gi\|69048180\|gb\|AAY99704.1\| AraC [Broad host range vector pBMTB-2] gi\|92429682 - gi\|92429682\|gb\|ABE77210.1\| AraC [Tn7 delivery vector pGRG36] gi\|69048351 - gi\|69048351\|gb\|AAY99728.1\| AraC [Broad host range vector pBTB-4] gi\|69048362 - gi\|69048362\|gb\|AAY99731.1\| AraC [Broad host range vector pBTB-5] gi\|69048321 - gi\|69048321\|gb\|AAY99722.1\| AraC [Broad host range vector pBTB-2] gi\|69048331 - gi\|69048331\|gb\|AAY99725.1\| AraC [Broad host range vector pBTB-3] gi\|69048299 - gi\|69048299\|gb\|AAY99716.1\| AraC [Broad host range vector pBMTB-5] gi\|69048311 - gi\|69048311\|gb\|AAY99719.1\| AraC [Broad host range vector pBTB-1] gi\|69048217 - gi\|69048217\|gb\|AAY99708.1\| AraC [Broad host range vector pBMTB-3] gi\|69048283 - gi\|69048283\|gb\|AAY99712.1\| AraC [Broad host range vector pBMTB-4] gi\|189370804, gi... - gi\|189405305\|ref\|ZP_02814596.2\| arabinose operon regulatory protein [Escherichia coli O157:H7 str. E... gi\|189404383, gi... - gi\|189404383\|ref\|ZP_02789066.2\| arabinose operon regulatory protein [Escherichia coli O157:H7 str. E... gi\|189403571, gi... - gi\|189403571\|ref\|ZP_02796293.2\| arabinose operon regulatory protein [Escherichia coli O157:H7 str. E... gi\|189357017, gi... - gi\|189402188\|ref\|ZP_02780677.2\| arabinose operon regulatory protein [Escherichia coli O157:H7 str. E... gi\|189010427, gi... - gi\|189010427\|ref\|ZP_02806954.2\| arabinose operon regulatory protein [Escherichia coli O157:H7 str. E... gi\|188025161, gi... - gi\|188025161\|ref\|ZP_02776450.2\| arabinose operon regulatory protein [Escherichia coli O157:H7 str. E... gi\|187767758, gi... - gi\|187776337\|ref\|ZP_02801913.2\| arabinose operon regulatory protein [Escherichia coli O157:H7 str. E... gi\|211909024 - gi\|211909024\|gb\|ACJ12805.1\| AraC [Suicide vector pMQ200] gi\|211909019 - gi\|211909019\|gb\|ACJ12801.1\| AraC [Shuttle vector pMQ175] gi\|138754319 - gi\|138754319\|emb\|CAL59724.1\| transcriptional regulator AraC [Cloning vector pSC101BADgbaA-ISceI(amp)... gi\|171194030 - gi\|171194030\|gb\|ACB45214.1\| AraC [Cloning vector pMQ125] gi\|171194024 - gi\|171194024\|gb\|ACB45209.1\| AraC [Cloning vector pMQ124] gi\|217320407, gi... - gi\|217324186\|ref\|ZP_03440270.1\| arabinose operon regulatory protein [Escherichia coli O157:H7 str. T... gi\|209157126, gi... - gi\|209395726\|ref\|YP_002268672.1\| arabinose operon regulatory protein [Escherichia coli O157:H7 str. ... gi\|208820409, gi... - gi\|208820409\|ref\|ZP_03260729.1\| arabinose operon regulatory protein [Escherichia coli O157:H7 str. E... gi\|208814057, gi... - gi\|208814057\|ref\|ZP_03255386.1\| arabinose operon regulatory protein [Escherichia coli O157:H7 str. E... gi\|208726169, gi... - gi\|208806368\|ref\|ZP_03248705.1\| arabinose operon regulatory protein [Escherichia coli O157:H7 str. E... gi\|194439416, gi... - gi\|194439416\|ref\|ZP_03071493.1\| arabinose operon regulatory protein [Escherichia coli 101-1], gi\|194... gi\|194429372, gi... - gi\|194429372\|ref\|ZP_03061897.1\| arabinose operon regulatory protein [Escherichia coli B171], gi\|1944... gi\|193070820, gi... - gi\|193070820\|ref\|ZP_03051753.1\| arabinose operon regulatory protein [Escherichia coli E110019], gi\|1... gi\|193065896, gi... - gi\|193065896\|ref\|ZP_03046957.1\| arabinose operon regulatory protein [Escherichia coli E22], gi\|19292... gi\|191167786, gi... - gi\|191167786\|ref\|ZP_03029593.1\| arabinose operon regulatory protein [Escherichia coli B7A], gi\|19090... gi\|189406124, gi... - gi\|189406124\|ref\|ZP_02826496.2\| arabinose operon regulatory protein [Escherichia coli O157:H7 str. E...	327.0	[0..1]	[164..24]
gi\|75175622 - gi\|75175622\|ref\|ZP_00695830.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Shigella b...	327.0	[0..1]	[164..10]
gi\|15149223 - gi\|15149223\|gb\|AAK85197.1\| AraC [Expression vector pBGH] gi\|75189166 - gi\|75189166\|ref\|ZP_00702433.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Escherichi... gi\|83585212 - gi\|83585212\|ref\|ZP_00923862.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Escherichi... gi\|75209414 - gi\|75209414\|ref\|ZP_00709646.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Escherichi... gi\|75194283 - gi\|75194283\|ref\|ZP_00704353.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Escherichi... gi\|75234303 - gi\|75234303\|ref\|ZP_00718681.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Escherichi... gi\|75229085 - gi\|75229085\|ref\|ZP_00715665.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Escherichi... gi\|75511712 - gi\|75511712\|ref\|ZP_00734350.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Escherichi... gi\|75256062 - gi\|75256062\|ref\|ZP_00727775.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Escherichi...	327.0	[0..1]	[164..10]
ARAC_ECOLI - Arabinose operon regulatory protein - Escherichia coli gi\|81244079, gi\|... - gi\|82542668\|ref\|YP_406615.1\| DNA-binding transcriptional regulator AraC [Shigella boydii Sb227], gi\|... gi\|74231244 - gi\|74231244\|gb\|ABA00719.1\| AraC [Expression vector pBAD322C] EG10054 - ara regulon transcriptional activator; autorepressor / Transcriptional activator for the ara regulon... gi\|74231247 - gi\|74231247\|gb\|ABA00721.1\| AraC [Expression vector pBAD322G] gi\|81345424 - gi\|81345424\|gb\|ABB71432.1\| AraC [Cloning vector pBAD24hyg] gi\|74231241 - gi\|74231241\|gb\|ABA00717.1\| AraC [Expression vector pBAD322] gi\|116517417 - gi\|116517417\|gb\|ABJ99077.1\| AraC [Cloning vector pSW4426T] gi\|124530633, gi... - gi\|124530633\|ref\|ZP_01701217.1\| transcriptional regulator, AraC family [Escherichia coli B], gi\|1244... gi\|124491095 - gi\|124491095\|gb\|ABN12901.1\| AraC [Cloning vector pN15E4] gi\|251783628, gi... - gi\|251783628\|ref\|YP_002997932.1\| hypothetical protein B21_00065 [Escherichia coli BL21], gi\|24237590... gi\|116517421 - gi\|116517421\|gb\|ABJ99080.1\| AraC [Cloning vector pSW4427T] gi\|238899466, gi... - gi\|238899466\|ref\|YP_002925262.1\| DNA-binding transcriptional dual regulator [Escherichia coli BW2952... gi\|253972088, gi... - gi\|254160187\|ref\|YP_003043295.1\| DNA-binding transcriptional dual regulator [Escherichia coli B str.... gi\|253325950, gi... - gi\|254286990\|ref\|YP_003052738.1\| DNA-binding transcriptional dual regulator [Escherichia coli BL21(D... gi\|226344769 - gi\|226344769\|gb\|ACO48887.1\| AraC [Expression vector pBADSce] gi\|254791202, gi... - gi\|254791202\|ref\|YP_003076039.1\| DNA-binding transcriptional dual regulator [Escherichia coli O157:H... gi\|170021580, gi... - gi\|170021580\|ref\|YP_001726534.1\| DNA-binding transcriptional regulator AraC [Escherichia coli ATCC 8... gi\|188490648, gi... - gi\|188495449\|ref\|ZP_03002719.1\| arabinose operon regulatory protein [Escherichia coli 53638], gi\|188... gi\|195939280 - gi\|195939280\|ref\|ZP_03084662.1\| DNA-binding transcriptional regulator AraC [Escherichia coli O157:H7... gi\|209910514, gi... - gi\|209917255\|ref\|YP_002291339.1\| DNA-binding transcriptional regulator AraC [Escherichia coli SE11],... gi\|21321946, gi\|... - gi\|89106948\|ref\|AP_000728.1\| DNA-binding transcriptional dual regulator [Escherichia coli str. K-12 ... gi\|13359524, gi\|... - gi\|15829322\|ref\|NP_308095.1\| DNA-binding transcriptional regulator AraC [Escherichia coli O157:H7 st... gi\|193299424 - gi\|193299424\|gb\|ACF17856.1\| araC [Escherichia-Pseudomonas shuttle vector pHERD20T] gi\|193299427 - gi\|193299427\|gb\|ACF17858.1\| AraC [Escherichia-Pseudomonas shuttle vector pHERD28T] gi\|193299432 - gi\|193299432\|gb\|ACF17862.1\| AraC [Escherichia-Pseudomonas shuttle vector pHERD30T] gi\|193299437 - gi\|193299437\|gb\|ACF17866.1\| AraC [Escherichia-Pseudomonas shuttle vector pHERD26T] gi\|154918188 - gi\|154918188\|gb\|ABS88738.1\| AraC [shuttle vector pUCP18-RedS] gi\|218552647, gi... - gi\|218552647\|ref\|YP_002385560.1\| DNA-binding transcriptional regulator AraC [Escherichia coli IAI1],... gi\|157159533, gi... - gi\|157159533\|ref\|YP_001456851.1\| DNA-binding transcriptional regulator AraC [Escherichia coli HS], g... gi\|218350266, gi... - gi\|218693534\|ref\|YP_002401201.1\| DNA-binding transcriptional regulator AraC [Escherichia coli 55989]... gi\|157081471, gi... - gi\|157159441\|ref\|YP_001461234.1\| DNA-binding transcriptional regulator AraC [Escherichia coli E24377... gi\|218703324, gi... - gi\|218703324\|ref\|YP_002410843.1\| DNA-binding transcriptional regulator AraC [Escherichia coli UMN026... gi\|169639578 - gi\|169639578\|gb\|ACA60874.1\| AraC [phagemid cloning vector pA2] gi\|1490532 - gi\|1490532\|gb\|AAC53662.1\| araC protein gi\|6003508 - gi\|6003508\|gb\|AAF00474.1\|AF179381_1 L-arabinose responsive transcription factor [Expression vector p... gi\|15554339 - gi\|15554339\|gb\|AAL02039.1\| araC protein [Red recombinase plasmid pKD20] gi\|74231257 - gi\|74231257\|gb\|ABA00728.1\| AraC [Expression vector pBAD322Tp] gi\|15554346 - gi\|15554346\|gb\|AAL02045.1\| araC protein [Red recombinase plasmid pKD46] gi\|70955703 - gi\|70955703\|gb\|AAZ16411.1\| transcriptional regulator [Expression vector pBAD322S] gi\|29415711 - gi\|29415711\|gb\|AAO12754.1\| AraC [CRIM plasmid pKD16] gi\|74231250 - gi\|74231250\|gb\|ABA00723.1\| AraC [Expression vector pBAD322K] ARAC_ECO57 - Arabinose operon regulatory protein OS=Escherichia coli O157:H7 GN=araC PE=3 SV=1 gi\|74231253 - gi\|74231253\|gb\|ABA00725.1\| AraC [Expression vector pBAD322T] gi\|55274276 - gi\|55274276\|gb\|AAV49031.1\| AraC [Expression vector pFL190] EG10054 - ara regulon transcriptional activator; autorepressor / Transcriptional activator for the ara regulon... gi\|12512761, gi\|... - gi\|15799748\|ref\|NP_285760.1\| DNA-binding transcriptional regulator AraC [Escherichia coli O157:H7 ED... gi\|56792956 - gi\|56792956\|gb\|AAW30660.1\| AraC [synthetic construct]	326.0	[0..1]	[164..7]
gi\|73854158, gi\|... - gi\|74310681\|ref\|YP_309100.1\| DNA-binding transcriptional regulator AraC [Shigella sonnei Ss046], gi\|...	325.0	[0..1]	[164..7]
gi\|218425504, gi... - gi\|218687940\|ref\|YP_002396152.1\| DNA-binding transcriptional regulator AraC [Escherichia coli ED1a],... gi\|227837864, gi... - gi\|227885035\|ref\|ZP_04002840.1\| DNA-binding transcriptional regulator AraC [Escherichia coli 83972],... gi\|117622352, gi... - gi\|117622352\|ref\|YP_851265.1\| DNA-binding transcriptional regulator AraC [Escherichia coli APEC O1],... gi\|91209124, gi\|... - gi\|91209124\|ref\|YP_539110.1\| DNA-binding transcriptional regulator AraC [Escherichia coli UTI89], gi...	325.0	[0..1]	[164..24]
gi\|218363772, gi... - gi\|218557003\|ref\|YP_002389916.1\| DNA-binding transcriptional regulator AraC [Escherichia coli S88], ... gi\|26106386, gi\|... - gi\|26245989\|ref\|NP_752028.1\| DNA-binding transcriptional regulator AraC [Escherichia coli CFT073], g...	324.0	[0..1]	[164..7]
gi\|75236939 - gi\|75236939\|ref\|ZP_00720998.1\| COG2207: AraC-type DNA-binding domain-containing proteins [Escherichi...	322.0	[0..1]	[164..10]
gi\|110341868, gi... - gi\|110640276\|ref\|YP_668004.1\| DNA-binding transcriptional regulator AraC [Escherichia coli 536], gi\|... gi\|191174220, gi... - gi\|191174220\|ref\|ZP_03035731.1\| arabinose operon regulatory protein [Escherichia coli F11], gi\|19090... gi\|215263298, gi... - gi\|215485226\|ref\|YP_002327657.1\| DNA-binding transcriptional regulator AraC [Escherichia coli O127:H...	321.0	[0..1]	[164..7]
gi\|56383143, gi\|... - gi\|56479592\|ref\|NP_706017.2\| DNA-binding transcriptional regulator AraC [Shigella flexneri 2a str. 3... gi\|30061629, gi\|... - gi\|30061629\|ref\|NP_835800.1\| DNA-binding transcriptional regulator AraC [Shigella flexneri 2a str. 2...	321.0	[0..1]	[164..7]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPLLPGYSFN AHLVAGLTPI EANGYLDFFI DRPLGMKGYI LNLTIRGQGV VKNQGREFVC  60
   61 RPGDILLFPP GEIHHYGRHP EAREWYHQWV YFRPRAYWHE WLNWPSIFAN TGFFRPDEAH 120
  121 QPHFSDLFGQ IINAGQGEGR YSELLAINLL EQLLLRRMEA INES

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	85.39794
Match:	2aacA
Description:	Regulatory protein AraC
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits