YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|3114515, gi\|1...
Organism:	Escherichia coli
Length:	193 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3114515, gi|1....

Description	E-value	Query Range	Subject Range
PTH_SHIBS - Peptidyl-tRNA hydrolase OS=Shigella boydii serotype 4 (strain Sb227) GN=pth PE=3 SV=1	293.0	[0..1]	[193..2]
PTH_PHOLL - Peptidyl-tRNA hydrolase OS=Photorhabdus luminescens subsp. laumondii GN=pth PE=3 SV=1 PTH_PHOLL - Peptidyl-tRNA hydrolase OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 105565 ...	286.0	[0..2]	[192..4]
gi\|89073086, gi\|... - gi\|89073086\|ref\|ZP_01159625.1\| peptidyl-tRNA hydrolase [Photobacterium sp. SKA34], gi\|89051039\|gb\|EA...	285.0	[0..2]	[193..5]
PTH_PSEA6 - Peptidyl-tRNA hydrolase OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) GN=pth PE=3 SV=1	278.0	[0..2]	[193..4]
PTH_THICR - Peptidyl-tRNA hydrolase OS=Thiomicrospira crunogena (strain XCL-2) GN=pth PE=3 SV=1	277.0	[0..1]	[190..3]
PTH_ACISJ - Peptidyl-tRNA hydrolase OS=Acidovorax sp. (strain JS42) GN=pth PE=3 SV=1	277.0	[0..2]	[192..2]
PTH_SYNJA - Peptidyl-tRNA hydrolase OS=Synechococcus sp. (strain JA-3-3Ab) GN=pth PE=3 SV=1 gi\|86605936 - gi\|86605936\|ref\|YP_474699.1\| peptidyl-tRNA hydrolase [Cyanobacteria bacterium Yellowstone A-Prime]	274.0	[0..2]	[188..14]
PTH_SHIDS - Peptidyl-tRNA hydrolase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=pth PE=3 SV=1	272.0	[0..1]	[193..2]
PTH_CHLAA - Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=pth P... PTH_CHLSY - Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=pth ...	272.0	[0..2]	[188..1]
gi\|1093598 - gi\|1093598\|prf\|\|2104267B peptidyl-tRNA hydrolase	272.0	[0..1]	[193..2]

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Predicted Domain #1

Region A:
Residues: [1-193]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TIKLIVGLAN PGAEYAATRH NAGAWFVDLL AERLRAPLRE EAKFFGYTSR VTLGGEDVRL  60
   61 LVPTTFMNLS GKAVAAMASF FRINPDEILV AHDELDLPPG VAKFKLGGGH GGHNGLKDII 120
  121 SKLGNNPNFH RLRIGIGHPG DKNKVVGFVL GKPPVSEQKL IDEAIDEAAR CTEMWFTDGL 180
  181 TKATNRLHAF KAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.30103
Match:	2pthA
Description:	PEPTIDYL-TRNA HYDROLASE FROM ESCHERICHIA COLI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
aminoacyl-tRNA hydrolase activity	2.52131013443946	bayes_pls_golite062009
catalytic activity	1.78077210975677	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.734671141446533	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: