YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|157829635, gi...
Organism:	Escherichia coli
Length:	290 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|157829635, gi....

Description	E-value	Query Range	Subject Range
gi\|77545197, gi\|... - gi\|77919114\|ref\|YP_356929.1\| site-specific recombinase [Pelobacter carbinolicus DSM 2380], gi\|775451...	235.0	[0..4]	[290..3]
gi\|51892959, gi\|... - gi\|51892959\|ref\|YP_075650.1\| recombinase [Symbiobacterium thermophilum IAM 14863], gi\|51856648\|dbj\|B...	234.0	[0..5]	[289..4]
gi\|83573258, gi\|... - gi\|83590344\|ref\|YP_430353.1\| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC 39073], ...	230.0	[0..4]	[289..3]
gi\|52306853, gi\|... - gi\|52424801\|ref\|YP_087938.1\| site-specific tyrosine recombinase XerD [Mannheimia succiniciproducens ...	229.0	[0..1]	[290..3]
gi\|98662087 - gi\|98662087\|dbj\|GAA00976.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	228.0	[0..1]	[289..46]
gi\|42629772 - gi\|42629772\|ref\|ZP_00155317.1\| COG4974: Site-specific recombinase XerD [Haemophilus influenzae R2846... gi\|145628659, gi... - gi\|145628659\|ref\|ZP_01784459.1\| tyrosine recombinase [Haemophilus influenzae 22.1-21], gi\|144979129\|...	227.0	[0..1]	[290..2]
gi\|68057116, gi\|... - gi\|68248917\|ref\|YP_248029.1\| site-specific tyrosine recombinase XerD [Haemophilus influenzae 86-028N...	227.0	[0..1]	[290..2]
gi\|217961583, gi... - gi\|217961583\|ref\|YP_002340153.1\| integrase/recombinase XerD [Bacillus cereus AH187], gi\|217064224\|gb... gi\|206976263, gi... - gi\|206976263\|ref\|ZP_03237171.1\| integrase/recombinase XerD [Bacillus cereus H3081.97], gi\|206745459\|... gi\|228585232, gi... - gi\|229198213\|ref\|ZP_04324921.1\| Tyrosine recombinase xerD [Bacillus cereus m1293], gi\|228585232\|gb\|E... gi\|229140825, gi... - gi\|229140825\|ref\|ZP_04269370.1\| Tyrosine recombinase xerD [Bacillus cereus BDRD-ST26], gi\|228642615\|... gi\|42783204, gi\|... - gi\|42783204\|ref\|NP_980451.1\| site-specific tyrosine recombinase XerD [Bacillus cereus ATCC 10987], g...	227.0	[0..3]	[290..2]
gi\|148827463, gi... - gi\|148827463\|ref\|YP_001292216.1\| site-specific tyrosine recombinase XerD [Haemophilus influenzae Pit... gi\|145272372, gi... - gi\|145638777\|ref\|ZP_01794386.1\| site-specific tyrosine recombinase XerD [Haemophilus influenzae Pitt... gi\|42630612 - gi\|42630612\|ref\|ZP_00156151.1\| COG4974: Site-specific recombinase XerD [Haemophilus influenzae R2866...	227.0	[0..1]	[290..2]
gi\|47551979, gi\|... - gi\|47778274\|ref\|YP_020956.2\| site-specific tyrosine recombinase XerD [Bacillus anthracis str. 'Ames ... gi\|170668882, gi... - gi\|170687265\|ref\|ZP_02878483.1\| integrase/recombinase XerD [Bacillus anthracis str. A0465], gi\|17066... gi\|30264167, gi\|... - gi\|30264167\|ref\|NP_846544.1\| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Ames],... gi\|167512483, gi... - gi\|167639424\|ref\|ZP_02397695.1\| integrase/recombinase XerD [Bacillus anthracis str. A0193], gi\|16751... gi\|65321483, gi\|... - gi\|65321483\|ref\|ZP_00394442.1\| COG4974: Site-specific recombinase XerD [Bacillus anthracis str. A201... gi\|172081977, gi... - gi\|177652642\|ref\|ZP_02935058.1\| integrase/recombinase XerD [Bacillus anthracis str. A0174], gi\|17208... gi\|170705812, gi... - gi\|170705812\|ref\|ZP_02896275.1\| integrase/recombinase XerD [Bacillus anthracis str. A0389], gi\|17012... gi\|196030307, gi... - gi\|196038584\|ref\|ZP_03105892.1\| integrase/recombinase XerD [Bacillus cereus NVH0597-99], gi\|19603030... gi\|190562864, gi... - gi\|190565945\|ref\|ZP_03018864.1\| integrase/recombinase XerD [Bacillus anthracis Tsiankovskii-I], gi\|1... gi\|49480325, gi\|... - gi\|49480325\|ref\|YP_038149.1\| site-specific tyrosine recombinase XerD [Bacillus thuringiensis serovar... gi\|218535959, gi... - gi\|218905229\|ref\|YP_002453063.1\| integrase/recombinase XerD [Bacillus cereus AH820], gi\|218535959\|gb... gi\|49186997, gi\|... - gi\|49186997\|ref\|YP_030249.1\| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Sterne... gi\|196021965, gi... - gi\|196047216\|ref\|ZP_03114432.1\| integrase/recombinase XerD [Bacillus cereus 03BB108], gi\|196021965\|g... gi\|167633747, gi... - gi\|167633747\|ref\|ZP_02392071.1\| integrase/recombinase XerD [Bacillus anthracis str. A0442], gi\|16753... gi\|165871247, gi... - gi\|165871247\|ref\|ZP_02215897.1\| integrase/recombinase XerD [Bacillus anthracis str. A0488], gi\|16471... gi\|225866075, gi... - gi\|225866075\|ref\|YP_002751453.1\| integrase/recombinase XerD [Bacillus cereus 03BB102], gi\|225786005\|... gi\|227002405, gi... - gi\|227816868\|ref\|YP_002816877.1\| integrase/recombinase XerD [Bacillus anthracis str. CDC 684], gi\|22... gi\|228830429, gi... - gi\|228929139\|ref\|ZP_04092166.1\| Tyrosine recombinase xerD [Bacillus thuringiensis serovar pondicheri... gi\|228811796, gi... - gi\|228947809\|ref\|ZP_04110096.1\| Tyrosine recombinase xerD [Bacillus thuringiensis serovar monterrey ... gi\|229093151, gi... - gi\|229093151\|ref\|ZP_04224269.1\| Tyrosine recombinase xerD [Bacillus cereus Rock3-42], gi\|228690125\|g... gi\|228659747, gi... - gi\|229123612\|ref\|ZP_04252807.1\| Tyrosine recombinase xerD [Bacillus cereus 95/8201], gi\|228659747\|gb... gi\|229186335, gi... - gi\|229186335\|ref\|ZP_04313500.1\| Tyrosine recombinase xerD [Bacillus cereus BGSC 6E1], gi\|228597129\|g... gi\|229604915, gi... - gi\|229604915\|ref\|YP_002868390.1\| integrase/recombinase XerD [Bacillus anthracis str. A0248], gi\|2292... gi\|254683858 - gi\|254683858\|ref\|ZP_05147718.1\| site-specific tyrosine recombinase XerD [Bacillus anthracis str. CNE... gi\|254721693 - gi\|254721693\|ref\|ZP_05183482.1\| site-specific tyrosine recombinase XerD [Bacillus anthracis str. A10... gi\|254736205 - gi\|254736205\|ref\|ZP_05193911.1\| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Wes... gi\|254744094 - gi\|254744094\|ref\|ZP_05201777.1\| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Kru... gi\|254754126 - gi\|254754126\|ref\|ZP_05206161.1\| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Vol... gi\|254758184 - gi\|254758184\|ref\|ZP_05210211.1\| site-specific tyrosine recombinase XerD [Bacillus anthracis str. Aus... gi\|118479292, gi... - gi\|118479292\|ref\|YP_896443.1\| site-specific tyrosine recombinase XerD [Bacillus thuringiensis str. A...	226.0	[0..3]	[290..2]

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Predicted Domain #1

Region A:
Residues: [1-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QDLARIEQFL DALWLEKNLA ENTLNAYRRD LSMMVEWLHH RGLTLATAQS DDLQALLAER  60
   61 LEGGYKATSS ARLLSAVRRL FQYLYREKFR EDDPSAHLAS PKLPQRLPKD LSEAQVERLL 120
  121 QAPLIDQPLE LRDKAMLEVL YATGLRVSEL VGLTMSDISL RQGVVRVIGK GNKERLVPLG 180
  181 EEAVYWLETY LEHGRPWLLN GVSIDVLFPS QRAQQMTRQT FWHRIKHYAV LAGIDSEKLS 240
  241 PHVLRHAFAT HLLNHGADLR VVQMLLGHSD LSTTQIYTHV ATERLRQLHQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	59.0
Match:	1a0pA
Description:	SITE-SPECIFIC RECOMBINASE, XERD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
site-specific recombinase activity	4.99325011803106	bayes_pls_golite062009
integrase activity	3.60695091575172	bayes_pls_golite062009
catalytic activity	2.22520758916604	bayes_pls_golite062009
structure-specific DNA binding	0.11292854906722	bayes_pls_golite062009
DNA binding	0.10970863758177	bayes_pls_golite062009
nucleic acid binding	0.06580979261817	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: