YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7546212
Organism:	Escherichia coli
Length:	266 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7546212.

Description	E-value	Query Range	Subject Range
gi\|166857129, gi... - gi\|76795368\|ref\|ZP_00777741.1\| Periplasmic binding protein [Thermoanaerobacter ethanolicus ATCC 3322... gi\|241903823, gi... - gi\|241903823\|ref\|ZP_04788540.1\| periplasmic binding protein [Thermoanaerobacter brockii subsp. finni...	229.0	[0..4]	[266..63]
gi\|114843982, gi... - gi\|167040563\|ref\|YP_001663548.1\| periplasmic binding protein [Thermoanaerobacter sp. X514], gi\|16685...	227.0	[0..4]	[266..63]
gi\|20806884 - gi\|20806884\|ref\|NP_622055.1\| ABC-type Fe3+-siderophores transport systems, periplasmic components [T... gi\|20806884, gi\|... - gi\|20806884\|ref\|NP_622055.1\| ABC-type Fe3+-siderophores transport systems, periplasmic components [T...	223.0	[0..4]	[266..75]
gi\|18893949, gi\|... - gi\|18978146\|ref\|NP_579503.1\| iron III ABC transporter, ATP-binding protein [Pyrococcus furiosus DSM ...	216.0	[0..4]	[266..81]
gi\|5457942, gi\|1... - gi\|5457942\|emb\|CAB49432.1\| Iron (III) ABC transporter, periplasmic-binding protein, putative [Pyroco... gi\|7521157, gi\|5... - pir\|\|A75169 probable iron (III) ABC transporter, periplasmic-binding protein PAB0349 - Pyrococcus ab...	214.0	[0..4]	[266..84]
gi\|57640800, gi\|... - gi\|57640800\|ref\|YP_183278.1\| vitamin B12 transport protein precursor [Thermococcus kodakarensis KOD1...	212.0	[0..4]	[266..88]
gi\|3258088, gi\|1... - gi\|3258088\|dbj\|BAA30771.1\| 345aa long hypothetical protein [Pyrococcus horikoshii OT3], gi\|14591428\|... gi\|7519230 - pir\|\|C71046 hypothetical protein PH1659 - Pyrococcus horikoshii	211.0	[0..4]	[265..80]
gi\|85721163, gi\|... - gi\|85858072\|ref\|YP_460274.1\| ABC-type transporter cobalamide binding protein [Syntrophus aciditrophi...	209.0	[0..3]	[265..46]
gi\|89085832, gi\|... - gi\|89099446\|ref\|ZP_01172322.1\| YvrC [Bacillus sp. NRRL B-14911], gi\|89085832\|gb\|EAR64957.1\| YvrC [Ba...	207.0	[0..3]	[265..96]

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Predicted Domain #1

Region A:
Residues: [1-266]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGIDPNRIVA LEWLPVELLL ALGIVPYGVA DTINYRLWVS EPPLPDSVID VGLRTEPNLE  60
   61 LLTEMKPSFM VWSAGYGPSP EMLARIAPGR GFNFSDGKQP LAMARKSLTE MADLLNLQSA 120
  121 AETHLAQYED FIRSMKPRFV KRGARPLLLT TLIDPRHMLV FGPNSLFQEI LDEYGIPNAW 180
  181 QGETNFWGST AVSIDRLAAY KDVDVLCFDH DNSKDMDALM ATPLWQAMPF VRAGRFQRVP 240
  241 AVWFYGATLS AMHFVRVLDN AIGGKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.69897
Match:	1eszA
Description:	Periplasmic ferric siderophore binding protein FhuD
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits