YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|18655431, gi\|...
Organism:	Arabidopsis thaliana
Length:	189 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18655431, gi|....

Description	E-value	Query Range	Subject Range
THPR_THEMA - RNA 2',3'-cyclic phosphodiesterase OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM... gi\|170288755, gi... - gi\|170288755\|ref\|YP_001738993.1\| 2'-5' RNA ligase [Thermotoga sp. RQ2], gi\|170176258\|gb\|ACB09310.1\| ... Y1860_THEMA, YI6... - (Q9X2H4) Hypothetical UPF0097 protein TM1860, UPF0097 protein TM_1860 OS=Thermotoga maritima GN=TM_1...	156.0	[0..7]	[182..1]
gi\|7446640, gi\|5... - pir\|\|C75197 conserved hypothetical protein PAB0062 - Pyrococcus abyssi (strain Orsay), gi\|5457535\|e... gi\|14520320, gi\|... - gi\|5457535\|emb\|CAB49026.1\| 2'-5' RNA ligase [Pyrococcus abyssi GE5], gi\|14520320\|ref\|NP_125795.1\| hy...	152.0	[0..7]	[180..1]
gi\|25520739 - pir\|\|F97680 hypothetical 35.7K protein in mala 3'region (orf3) [imported] - Agrobacterium tumefacien... gi\|15889933, gi\|... - gi\|15889933\|ref\|NP_355614.1\| hypothetical protein AGR_C_4856 [Agrobacterium tumefaciens str. C58], g...	148.0	[0..3]	[179..13]
gi\|91799062, gi\|... - gi\|92116168\|ref\|YP_575897.1\| 2',5' RNA ligase [Nitrobacter hamburgensis X14], gi\|91799062\|gb\|ABE6143...	147.0	[0..6]	[180..1]
gi\|75674615, gi\|... - gi\|75674615\|ref\|YP_317036.1\| 2',5' RNA ligase [Nitrobacter winogradskyi Nb-255], gi\|74419485\|gb\|ABA0...	147.0	[0..6]	[180..1]
gi\|57641673, gi\|... - gi\|57641673\|ref\|YP_184151.1\| 2'-5' RNA ligase [Thermococcus kodakarensis KOD1], gi\|57159997\|dbj\|BAD8...	147.0	[0..7]	[179..1]
gi\|85699605, gi\|... - gi\|85713701\|ref\|ZP_01044691.1\| 2',5' RNA ligase [Nitrobacter sp. Nb-311A], gi\|85699605\|gb\|EAQ37472.1...	146.0	[0..6]	[180..1]
gi\|94497518, gi\|... - gi\|94497518\|ref\|ZP_01304087.1\| hypothetical protein SKA58_08384 [Sphingomonas sp. SKA58], gi\|9442293...	145.0	[0..4]	[182..35]
gi\|71741338, gi\|... - gi\|71838112\|ref\|ZP_00677873.1\| 2'_5' RNA ligase [Pelobacter propionicus DSM 2379], gi\|71741338\|gb\|EA...	144.0	[0..6]	[183..1]

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Predicted Domain #1

Region A:
Residues: [1-189]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEVKKDVYS VWALPDEESE PRFKKLMEAL RSEFTGPRFV PHVTVAVSAY LTADEAKKMF  60
   61 ESACDGLKAY TATVDRVSTG TFFFQCVFLL LQTTPEVMEA GEHCKNHFNC STTTPYMPHL 120
  121 SLLYAELTEE EKKNAQEKAY TLDSSLDGLS FRLNRLALCK TDTEDKTLET WETVAVCNLN 180
  181 PGSHHHHHH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.30103
Match:	1fsiA
Description:	tRNA splicing product Appr>p cyclic nucleotide phosphodiesterase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.372436499192166	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: