YRC Public Data Repository - Protein Structure Prediction

Protein:	NDUC2_MACFA
Organism:	Macaca fascicularis
Length:	119 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUC2_MACFA.

Description	E-value	Query Range	Subject Range
NDUC2_MOUSE - NADH dehydrogenase [ubiquinone] 1 subunit C2 OS=Mus musculus GN=Ndufc2 PE=1 SV=1	198.0	[0..1]	[119..2]
gi\|57164133, gi\|... - gi\|57164133\|ref\|NP_001009290.1\| NADH dehydrogenase (ubiquinone) 1, subcomplex unknown, 2 [Rattus nor...	196.0	[0..1]	[119..2]
gi\|57102342 - gi\|57102342\|ref\|XP_533999.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1, subcomplex unk...	196.0	[0..1]	[119..2]
NDUC2_BOVIN - NADH dehydrogenase [ubiquinone] 1 subunit C2 OS=Bos taurus GN=NDUFC2 PE=1 SV=1	194.0	[0..1]	[119..2]
NDUC2_PANTR - NADH dehydrogenase [ubiquinone] 1 subunit C2 OS=Pan troglodytes GN=NDUFC2 PE=3 SV=1	189.0	[0..1]	[119..1]
gi\|49065322, gi\|... - gi\|7513177\|pir\|\|T08728 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) 14.1K chain - human, gi\|4906532... gi\|117644194 - gi\|117644194\|emb\|CAL37591.1\| hypothetical protein [synthetic construct]	189.0	[0..1]	[119..1]
NDUC2_PONAB - NADH dehydrogenase [ubiquinone] 1 subunit C2 OS=Pongo abelii GN=NDUFC2 PE=3 SV=1 NDUC2_PONPY - NADH dehydrogenase [ubiquinone] 1 subunit C2 OS=Pongo pygmaeus GN=NDUFC2 PE=3 SV=1	162.0	[0..1]	[118..1]

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Predicted Domain #1

Region A:
Residues: [1-119]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPRRNPEPL RFLPDESRSL PPPKLTDPRL LYVGFLGYCA GLVDNFIHRR PIRSAGLHRH  60
   61 LLYITAFYFV GYYLVKRGDY TYAVRDREMF GYMKLHPEDF SEKEKKTYAE IFEKFHPIR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	80.086186
Match:	PF06374.2
Description:	No description for PF06374.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits