YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|327463
Organism:	Human immunodeficiency virus 1
Length:	78 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|327463.

Description	E-value	Query Range	Subject Range
gi\|3114551 - gi\|3114551\|gb\|AAD03171.1\| Vpr [Human immunodeficiency virus type 1] VPR_HV193 - Protein Vpr OS=Human immunodeficiency virus type 1 group M subtype F1 (isolate 93BR020) GN=vpr PE=3 ...	163.0	[0..1]	[76..1]
gi\|57545278 - gi\|57545278\|gb\|AAW51542.1\| vpr protein [Human immunodeficiency virus 1]	163.0	[0..1]	[76..1]

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Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQAPEDQGP QRKPHNEWTL ELLEELKNEA VRHFPRIWLH GLGQHIYETY GDTWAGVEAI  60
   61 IRILQQLLFI HFQNWVST

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Detection Method:	PSI-BLAST
Confidence:	36.39794
Match:	1esxA
Description:	VPR protein fragments
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits