YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|55670303
Organism:	Thermus thermophilus
Length:	285 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|55670303.

Description	E-value	Query Range	Subject Range
gi\|55980997, gi\|... - gi\|55980997\|ref\|YP_144294.1\| thiosulfate sulfurtransferase [Thermus thermophilus HB8], gi\|55772410\|d... gi\|46196598, gi\|... - gi\|46198974\|ref\|YP_004641.1\| thiosulfate sulfurtransferase [Thermus thermophilus HB27], gi\|46196598\|...	240.0	[0..2]	[285..2]
gi\|222450857, gi... - gi\|222526978\|ref\|YP_002571449.1\| Rhodanese domain protein [Chloroflexus sp. Y-400-fl], gi\|222450857\|... gi\|53796683 - ref\|ZP_00357619.1\| COG2897: Rhodanese-related sulfurtransferase [Chloroflexus aurantiacus] gi\|76258728, gi\|... - gi\|76258728\|ref\|ZP_00766382.1\| Rhodanese-like [Chloroflexus aurantiacus J-10-fl], gi\|76166457\|gb\|EAO...	223.0	[0..2]	[282..3]
gi\|106769369, gi... - gi\|148654878\|ref\|YP_001275083.1\| rhodanese domain-containing protein [Roseiflexus sp. RS-1], gi\|1485...	215.0	[0..2]	[282..3]
gi\|221640355, gi... - gi\|221640355\|ref\|YP_002526617.1\| 3-mercaptopyruvate sulfurtransferase [Rhodobacter sphaeroides KD131... gi\|77464464, gi\|... - gi\|77464464\|ref\|YP_353968.1\| thiosulfate sulfurtransferase, rhodanese-like [Rhodobacter sphaeroides ... gi\|83372645, gi\|... - gi\|83372645\|ref\|ZP_00917425.1\| 3-mercaptopyruvate sulfurtransferase [Rhodobacter sphaeroides ATCC 17...	213.0	[0..5]	[283..4]
gi\|83310398, gi\|... - gi\|83310398\|ref\|YP_420662.1\| rhodanese-related sulfurtransferase [Magnetospirillum magneticum AMB-1]...	213.0	[0..3]	[282..3]
gi\|54022561, gi\|... - gi\|54022561\|ref\|YP_116803.1\| putative thiosulfate sulfurtransferase [Nocardia farcinica IFM 10152], ...	213.0	[0..3]	[283..1]
gi\|4406372 - gi\|4406372\|gb\|AAD19957.1\| thiosulfate sulfurtransferase [Datisca glomerata]	213.0	[0..4]	[282..76]
STR1_ARATH - Thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial OS=Arabidopsis thaliana GN=STR1 PE...	213.0	[0..6]	[281..77]
gi\|126437477, gi... - gi\|92906638\|ref\|ZP_01275418.1\| Thiosulfate sulfurtransferase [Mycobacterium sp. JLS], gi\|92434938\|gb... gi\|108801492, gi... - gi\|108801492\|ref\|YP_641689.1\| thiosulfate sulfurtransferase [Mycobacterium sp. MCS], gi\|108771911\|gb... gi\|92914329, gi\|... - gi\|92914329\|ref\|ZP_01282956.1\| Thiosulfate sulfurtransferase [Mycobacterium sp. KMS], gi\|92441446\|gb...	213.0	[0..3]	[283..1]
gi\|84391500, gi\|... - gi\|84500547\|ref\|ZP_00998796.1\| thiosulfate sulfurtransferase, putative [Oceanicola batsensis HTCC259...	212.0	[0..5]	[285..4]

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Predicted Domain #1

Region A:
Residues: [1-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 XGYAHPEVLV STDWVQEHLE DPKVRVLEVD EDILLYDTGH IPGAQKIDWQ RDFWDPVVRD  60
   61 FISEEEFAKL XERLGISNDT TVVLYGDKNN WWAAYAFWFF KYNGHKDVRL XNGGRQKWVE 120
  121 EGRPLTTEVP SYPPGRYEVP YRDESIRAYR DDVLEHIIKV KEGKGALVDV RSPQEYRGEL 180
  181 THXPDYPQEG ALRAGHIPGA KNIPWAKAVN PDGTFKSAEE LRALYEPLGI TKDKDIVVYX 240
  241 RIAERSSHSW FVLKYLLGYP HVKNYDGSWT EWGNLVGVPI AKGEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.39794
Match:	1uarA
Description:	Crystal structure of Rhodanese from Thermus thermophilus HB8
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
sulfurtransferase activity	2.90539767285523	bayes_pls_golite062009
transferase activity, transferring sulfur-containing groups	2.27106357502695	bayes_pls_golite062009
thiosulfate sulfurtransferase activity	1.13554444375998	bayes_pls_golite062009
binding	0.746344090872559	bayes_pls_golite062009
catalytic activity	0.687308230067573	bayes_pls_golite062009
protein binding	0.26324773851743	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: