| Protein: | gi|30680884 |
| Organism: | Arabidopsis thaliana |
| Length: | 578 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30680884.
| Description | E-value | Query Range |
Subject Range |
|
|
716.0 | [0..1] | [578..1] |
|
|
506.0 | [0..20] | [529..44] |
|
|
473.0 | [0..20] | [482..28] |
|
Region A: Residues: [1-303] |
1 11 21 31 41 51
| | | | | |
1 MGEGEEGDKF PPKTDEVTQE SMKSARQLDF TGGSSDVEHS HSNQASSMAA ASIPSPIVTV 60
61 TRPIITSQAP PTVATPIPPP PQSQGIILHV PIRHPRPESP NSMPRPAGET RDGTPQKKKQ 120
121 CNCKHSRCLK LYCECFASGT YCDGCNCVNC FNNVENEPAR RQAVESTLER NPNAFRPKIA 180
181 ASPHGGRDNR EEVGDVVMLA RHNKGCHCKK SGCLKKYCEC FQANILCSEN CKCLDCKNFE 240
241 GSEVRQSLFH GEHSHNLAYL QHANAAITGA IGSSGFASAP PPKRRKGQEI FFNQGTKDSS 300
301 THR
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [304-371] |
1 11 21 31 41 51
| | | | | |
1 LGQANNGRTT SSQTGSRAGG NASLGPSKVV YKSLLANIIK PMDVKALCSV LVAVAGEAAK 60
61 TLTEKRLA
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.360 | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
| View | Download | 0.349 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.349 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.294 | a.140.6 | Description not found. |
| View | Download | 0.276 | a.5.2 | UBA-like |
| View | Download | 0.252 | a.5.3 | N-terminal domain of phosphatidylinositol transfer protein sec14p |
| View | Download | 0.247 | a.159.4 | Description not found. |
| View | Download | 0.234 | a.108.1 | Ribosomal protein L7/12, oligomerisation (N-terminal) domain |
| View | Download | 0.231 | a.38.1 | Helix-loop-helix DNA-binding domain |
| View | Download | 0.212 | a.39.1 | EF-hand |
|
Region A: Residues: [372-491] |
1 11 21 31 41 51
| | | | | |
1 NQKETSVASS VQDQGHVNNK AEKSGLEDSN ADGSKGRSLS PETLALMCDE RDTMLMVAAS 60
61 PNCSVEPTSQ LPNGQDQVYA EQEKVVLTKF RDCLNRIISC GEVKVFCLFV AESNCSMSRM 120
121
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.665 | N/A | N/A | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.455 | N/A | N/A | a.121.1 | Tetracyclin repressor-like, C-terminal domain |
| View | Download | 0.363 | N/A | N/A | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.363 | N/A | N/A | c.2.1 | NAD(P)-binding Rossmann-fold domains |
| View | Download | 0.363 | N/A | N/A | d.73.1 | RuBisCO, small subunit |
| View | Download | 0.350 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.350 | N/A | N/A | a.1.1 | Globin-like |
| View | Download | 0.303 | N/A | N/A | a.39.1 | EF-hand |
| View | Download | 0.256 | N/A | N/A | d.52.7 | Ribosome-binding factor A, RbfA |
| View | Download | 0.252 | N/A | N/A | a.1.1 | Globin-like |
|
Region A: Residues: [492-578] |
1 11 21 31 41 51
| | | | | |
1 DLDTPVQTTV RIDPVVQQAP VANGVSQTAK QPSQLNTTTP NTSSQTANGV SQTAKQPSQL 60
61 TTTTTTPNTS SQTHLHKTPA LSEKKDL
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.516 | d.95.2 | Homing endonucleases |
| View | Download | 0.516 | d.95.2 | Homing endonucleases |
| View | Download | 0.356 | d.74.1 | Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) |
| View | Download | 0.351 | d.95.2 | Homing endonucleases |
| View | Download | 0.351 | d.95.2 | Homing endonucleases |
| View | Download | 0.329 | b.1.1 | Immunoglobulin |
| View | Download | 0.311 | d.95.2 | Homing endonucleases |
| View | Download | 0.311 | d.95.2 | Homing endonucleases |
| View | Download | 0.289 | d.45.1 | ClpS-like |
| View | Download | 0.289 | d.45.1 | ClpS-like |
