YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7789, gi\|7438235
Organism:	Drosophila melanogaster
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7789, gi|7438235.

Description	E-value	Query Range	Subject Range
gi\|38048321 - gi\|38048321\|gb\|AAR10063.1\| similar to Drosophila melanogaster Cys [Drosophila yakuba]	147.0	[0..9]	[149..1]
gi\|17944432 - gi\|17944432\|gb\|AAL48106.1\| RH01620p [Drosophila melanogaster]	130.0	[0..24]	[149..1]
gi\|809608, gi\|10... - gi\|809608\|emb\|CAA60610.1\| cysteine proteinase inhibitor [Zea mays], pir\|\|S54828 cysteine proteinase ...	129.0	[0..42]	[141..31]
gi\|18158608 - gi\|18158608\|gb\|AAL59842.1\| cysteine protease inhibitor CPI-1 [Brassica oleracea]	129.0	[0..50]	[148..3]
CYT6_ARATH - Cysteine proteinase inhibitor 6 OS=Arabidopsis thaliana GN=CYS6 PE=1 SV=2	128.0	[0..20]	[145..3]
gi\|1586085, gi\|1... - gi\|1586085\|prf\|\|2203261A Cys protease inhibitor, pir\|\|JH0269 cystatin - avocado	127.0	[0..49]	[146..1]
gi\|125528064 - gi\|125528064\|gb\|EAY76178.1\| hypothetical protein OsI_04110 [Oryza sativa Indica Group] CYT1_ORYSJ - Cysteine proteinase inhibitor 1 OS=Oryza sativa subsp. japonica GN=Os01g0803200 PE=1 SV=2 CYT1_ORYSA - Cysteine proteinase inhibitor 1 precursor (Oryzacystatin-1) (Oryzacystatin I) (OC-I) (SPOC-I) (OsCP1...	127.0	[0..19]	[140..2]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGIKWATSP GVHQFSQSRR ASNMNVVKSL CILGLVLVSL IATQAADEQV VGGVSQLEGN  60
   61 SRKEALELLD ATLAQLATGD GPSYKAINVT SVTGQVVAGS LNTYEVELDN GSDKKQCTVK 120
  121 IWTQPWLKEN GTNIKIKCSG DDGELDRTW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.30103
Match:	1eqkA
Description:	Phytocystatin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits