| Protein: | gi|30678104 |
| Organism: | Arabidopsis thaliana |
| Length: | 871 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30678104.
| Description | E-value | Query Range |
Subject Range |
|
|
744.0 | [0..10] | [871..135] |
|
|
638.0 | [0..10] | [871..161] |
|
|
610.0 | [0..202] | [845..1] |
|
|
609.0 | [0..202] | [853..1] |
|
|
608.0 | [0..202] | [853..1] |
|
|
605.0 | [0..202] | [853..1] |
|
|
604.0 | [0..202] | [871..1] |
|
|
600.0 | [0..312] | [851..2] |
|
Region A: Residues: [1-191] |
1 11 21 31 41 51
| | | | | |
1 MIMNGKLKSR YNYLLKAGYG SSSDVIWRPG PQFSLSVPSS VNQDRKIIIR DSWMSMSISS 60
61 KSQESYGWGS WIDDAYLFPN CVTPAQSEDE CTSADSAIEV PRTHLNDKQV GAESFLCDEL 120
121 AAFSSENSNL SALFSDNYQP IEEPWLIQES ITLQHERNMQ TDSEQDVESC DDNENNLNTD 180
181 EQNHQLTETL L
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [192-302] |
1 11 21 31 41 51
| | | | | |
1 PDGGFFQSES IATTILINSS ICTVQRIAVL EGGKLVELLL EPVKTNVQCD SVYLGVITKF 60
61 VPHMGGAFVN IGSARHSFMD IKSNREPFIF PPFCDGSKKQ AADGSPILSM N
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [303-871] |
1 11 21 31 41 51
| | | | | |
1 DIPAPHEIEH ASYDFEASSL LDIDSNDPGE SFHDDDDEHE NDEYHVSDHL AGLVNGTVVN 60
61 HGAVEVGSEN GHIPMERGHS ADSLDSNASV AKASKVMSSK DNKWIQVRKG TKIIVQVVKE 120
121 GLGTKGPTLT AYPKLRSRFW VLLTRCKRIG VSKKISGVER TRLKVIAKTL QPQGFGLTVR 180
181 TVAAGHSLEE LQKDLDGLLL TWKNITDEAK SAALAADEGV EGAIPALLHR AMGQTLSVVQ 240
241 DYFNDKVEKM VVDSPRTYHE VTHYLQDMAP DLCNRVELHD KGIPLFDLYE IEEEIEGILS 300
301 KRVPLSNGGS LVIEQTEALV SIDVNGGHGM FGQGNSQEKA ILEVNLAAAR QIAREIRLRD 360
361 IGGIIVVDFI DMADESNKRL VYEEVKKAVE RDRSLVKVSE LSRHGLMEIT RKRVRPSVTF 420
421 MISEPCSCCH ATGRVEALET TFSKIEQEIC RQLAKMEKRG DLENPKSWPR FILRVDSHMS 480
481 SFLTTGKRTR LAILSSSLKV WILLKVARHF TRGTFEVKPF MDEKTVNERQ HQVAISLLKK 540
541 ADAIADSSGK KKLTLIPIKK EKTSGKQRR
|
| Detection Method: | |
| Confidence: | 163.0 |
| Match: | 2bx2L |
| Description: | Catalytic domain of E. coli RNase E |
Matching Structure (courtesy of the PDB): |
|
