YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|6573348, gi\|6...
Organism:	Homo sapiens
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6573348, gi|6....

Description	E-value	Query Range	Subject Range
FA5_BOVIN - Coagulation factor V OS=Bos taurus GN=F5 PE=1 SV=1	209.0	[0..1]	[160..2052]
FA5_MOUSE - Coagulation factor V OS=Mus musculus GN=F5 PE=1 SV=1 gi\|225000580, gi... - gi\|225000580\|gb\|AAI72650.1\| Coagulation factor V [synthetic construct], gi\|162319536\|gb\|AAI56131.1\| ...	208.0	[0..1]	[160..2024]
gi\|114565254 - gi\|114565254\|ref\|XP_513984.2\| PREDICTED: similar to Murine coagulation factor V [Pan troglodytes]	207.0	[0..1]	[160..1653]
gi\|62659617, gi\|... - gi\|62659617\|ref\|XP_222831.3\| PREDICTED: similar to Ac2-120 [Rattus norvegicus], gi\|32527727\|gb\|AAP86...	206.0	[0..1]	[160..1943]
FA5_PIG - Coagulation factor V OS=Sus scrofa GN=F5 PE=2 SV=1	206.0	[0..1]	[160..2099]
gi\|56417672 - gi\|56417672\|emb\|CAI23065.1\| coagulation factor V (proaccelerin, labile factor) [Homo sapiens]	205.0	[0..1]	[160..2070]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GCSTPLGMEN GKIENKQITA SSFKKSWWGD YWEPFRARLN AQGRVNAWQA KANNNKQWLE  60
   61 IDLLKIKKIT AIITQGCKSL SSEMYVKSYT IHYSEQGVEW KPYRLKSSMV DKIFEGNTNT 120
  121 KGHVKNFFNP PIISRFIRVI PKTWNQSITL RLELFGCDIY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.045757
Match:	1sddB
Description:	Crystal Structure of Bovine Factor Vai
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits