YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30678388
Organism:	Arabidopsis thaliana
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30678388.

Description	E-value	Query Range	Subject Range
gi\|116192375, gi... - gi\|88181818\|gb\|EAQ89286.1\| hypothetical protein CHGG_05905 [Chaetomium globosum CBS 148.51], gi\|1161...	137.0	[0..1]	[113..325]
gi\|7521452, gi\|9... - gi\|9632906\|ref\|NP_049935.1\| minor tail protein [Streptococcus phage Sfi19], pir\|\|T09271 probable tai...	124.0	[0..12]	[126..88]
gi\|9632950, gi\|2... - gi\|9632950\|ref\|NP_049978.1\| putative minor tail protein [Streptococcus phage Sfi21], pir\|\|T09202 pro...	121.0	[0..12]	[126..88]
gi\|29144868, gi\|... - gi\|29165636\|ref\|NP_049403.2\| putative tail component protein [Streptococcus phage DT1], gi\|29144868\|...	120.0	[0..12]	[126..88]
gi\|61383212 - gi\|61383212\|gb\|AAX45244.1\| putative tape measure protein [Streptococcus thermophilus bacteriophage M...	120.0	[0..12]	[126..88]
gi\|7248489, gi\|9... - gi\|9634660\|ref\|NP_038334.1\| ORF33 [Streptococcus phage 7201], gi\|7248489\|gb\|AAF43525.1\|AF145054_34 O...	119.0	[0..12]	[126..88]
gi\|38108882, gi\|... - gi\|39941420\|ref\|XP_360247.1\| hypothetical protein MG05621.4 [Magnaporthe grisea 70-15], gb\|EAA54830....	119.0	[0..1]	[114..3]
gi\|11359663 - gi\|11359663\|pir\|\|T50987 related to prefoldin subunit 1 [imported] - Neurospora crassa	119.0	[0..1]	[121..69]
gi\|49092698, gi\|... - gi\|67526431\|ref\|XP_661277.1\| hypothetical protein AN3673.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	118.0	[0..1]	[113..3]
gi\|16945386, gi\|... - gi\|32419429\|ref\|XP_330158.1\| hypothetical protein ( (AL389891) related to prefoldin subunit 1 [Neuro... gi\|85117998 - gi\|85117998\|ref\|XP_965357.1\| hypothetical protein NCU02970 [Neurospora crassa OR74A]	118.0	[0..1]	[113..3]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADEATRAAF MEIQASMIEL TGKLKQVQNQ MRNKEGDRKR AFLTLEELRP LPEETNTYKS  60
   61 IGKFVLEPKT VLEGEQEQKL KDSEAAVASL QTSKEYLEKQ VAEVENNLRE LLQQEPGIAQ 120
  121 QIMSMSM

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.44
Match:	1m1jC
Description:	Fibrinogen C-terminal domains; Fibrinogen gamma chain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits