| Protein: | AMS_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 571 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AMS_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
354.0 | [0..5] | [571..1] |
|
|
339.0 | [0..3] | [506..11] |
|
|
339.0 | [0..4] | [506..12] |
|
|
338.0 | [0..3] | [506..11] |
|
|
338.0 | [0..3] | [506..11] |
|
|
338.0 | [0..3] | [506..11] |
|
Region A: Residues: [1-151] |
1 11 21 31 41 51
| | | | | |
1 MESNMQNLLE KLRPLVGARA WDYCVLWRLN EDQRFVKWMG CCCGGTELIA ENGTEEFSYG 60
61 GCRDVMFHHP RTKSCEFLSH LPASIPLDSG IYAETLLTNQ TGWLSESSEP SFMQETICTR 120
121 VLIPIPGGLV ELFATRHVAE DQNVVDFVMG H
|
| Detection Method: |  |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [152-290] |
1 11 21 31 41 51
| | | | | |
1 CNMLMDDSVT INMMVADEVE SKPYGMLSGD IQQKGSKEED MMNLPSSYDI SADQIRLNFL 60
61 PQMSDYETQH LKMKSDYHHQ ALGYLPENGN KEMMGMNPFN TVEEDGIPVI GEPSLLVNEQ 120
121 QVVNDKDMNE NGRVDSGSD
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.380 | a.4.3 | ARID-like |
| View | Download | 0.344 | a.45.1 | Glutathione S-transferase (GST), C-terminal domain |
| View | Download | 0.306 | a.259.1 | Description not found. |
| View | Download | 0.302 | d.89.1 | Origin of replication-binding domain, RBD-like |
| View | Download | 0.302 | d.89.1 | Origin of replication-binding domain, RBD-like |
| View | Download | 0.302 | a.74.1 | Cyclin-like |
| View | Download | 0.217 | a.24.9 | alpha-catenin/vinculin |
|
Region A: Residues: [291-421] |
1 11 21 31 41 51
| | | | | |
1 CSDQIDDEDD PKYKKKSGKG SQAKNLMAER RRRKKLNDRL YALRSLVPRI TKLDRASILG 60
61 DAINYVKELQ NEAKELQDEL EENSETEDGS NRPQGGMSLN GTVVTGFHPG LSCNSNVPSV 120
121 KQDVDLENSN D
|
| Detection Method: | |
| Confidence: | 16.154902 |
| Match: | 1nkpA |
| Description: | Myc prot-oncogene protein |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [422-571] |
1 11 21 31 41 51
| | | | | |
1 KGQEMEPQVD VAQLDGREFF VKVICEYKPG GFTRLMEALD SLGLEVTNAN TTRYLSLVSN 60
61 VFKVEKNDNE MVQAEHVRNS LLEITRNTSR GWQDDQMATG SMQNEKNEVD YQHYDDHQHH 120
121 NGHHHPFDHQ MNQSAHHHHH HQHINHYHNQ
|
| Detection Method: | |
| Confidence: | 1.52 |
| Match: | 1u8sA |
| Description: | Crystal structure of putative glycine cleavage system transcriptional repressor |
Matching Structure (courtesy of the PDB): |
|
