YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110736591, gi...
Organism:	Arabidopsis thaliana
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110736591, gi....

Description	E-value	Query Range	Subject Range
gi\|50924476, gi\|... - gi\|50924476\|ref\|XP_472598.1\| OSJNBa0006B20.21 [Oryza sativa (japonica cultivar-group)], gi\|38344077\|...	167.0	[0..2]	[148..118]
gi\|116309799 - gi\|116309799\|emb\|CAH66838.1\| H0525C06.1 [Oryza sativa (indica cultivar-group)]	167.0	[0..2]	[148..118]
gi\|73976553 - gi\|73976553\|ref\|XP_539498.2\| PREDICTED: similar to pleckstrin homology domain containing, family A (...	164.0	[0..2]	[148..620]
GLTP2_ARATH - Glycolipid transfer protein 2 OS=Arabidopsis thaliana GN=GLTP2 PE=2 SV=1	160.0	[0..2]	[148..76]
PKHA8_RAT - Pleckstrin homology domain-containing family A member 8 OS=Rattus norvegicus GN=Plekha8 PE=1 SV=1	159.0	[0..2]	[148..368]
gi\|109066999 - gi\|109066999\|ref\|XP_001086395.1\| PREDICTED: similar to pleckstrin homology domain containing, family...	158.0	[0..2]	[148..367]
gi\|30481662, gi\|... - gi\|47716514\|ref\|NP_001001335.1\| pleckstrin homology domain containing, family A (phosphoinositide bi...	157.0	[0..2]	[148..322]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLEKMWESD PLVYSNLVEI LRKEAKEGSS RKPKSCSRAA LWLTRAMDFT LALLQRLVKD  60
   61 MSQNMEQAIE ECYNLTIKPW HGWISSAAFK VALKLVPNNN TFINVLAAKD ETHQMVQDDI 120
  121 TSLISLLIPL LSQLHSILEL YEVSKLKSP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.69897
Match:	1tfjA
Description:	Crystal structure of Bovine Glycolipid transfer protein in complex with a fatty acid
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits