YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|42565686
Organism:	Arabidopsis thaliana
Length:	561 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42565686.

Description	E-value	Query Range	Subject Range
DER_BACSU - GTPase Der OS=Bacillus subtilis (strain 168) GN=der PE=1 SV=1 ENGA_BACSU, DER_... - GTP-binding protein engA OS=Bacillus subtilis GN=engA PE=1 SV=1, GTPase Der OS=Bacillus subtilis GN=... gi\|221319445 - gi\|221319445\|ref\|ZP_03600739.1\| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str. JH6... gi\|221323721 - gi\|221323721\|ref\|ZP_03605015.1\| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str. SMY... gi\|221314523 - gi\|221314523\|ref\|ZP_03596328.1\| GTP-binding protein EngA [Bacillus subtilis subsp. subtilis str. NCI...	301.0	[0..112]	[557..6]
gi\|116075028, gi... - gi\|116075028\|ref\|ZP_01472288.1\| GTP-binding protein EngA [Synechococcus sp. RS9916], gi\|116067225\|gb...	300.0	[0..112]	[557..6]
DER_GEOKA - GTPase Der OS=Geobacillus kaustophilus (strain HTA426) GN=der PE=3 SV=1 ENGA_GEOKA, DER_... - GTP-binding protein engA OS=Geobacillus kaustophilus GN=engA PE=3 SV=1, GTPase Der OS=Geobacillus ka...	299.0	[0..112]	[557..6]
gi\|52080793, gi\|... - gi\|52080793\|ref\|YP_079584.1\| GTP-binding protein EngA [Bacillus licheniformis ATCC 14580], gi\|520040...	299.0	[0..112]	[557..6]
gi\|87125615, gi\|... - gi\|87125615\|ref\|ZP_01081460.1\| putative GTP-binding protein [Synechococcus sp. RS9917], gi\|86166915\|...	298.0	[0..112]	[557..6]
DER_BACCN - GTPase Der OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98) GN=der PE=3...	297.0	[0..112]	[557..6]
DER_CLOPE, ENGA_... - GTP-binding protein engA OS=Clostridium perfringens GN=engA PE=3 SV=1, GTPase Der OS=Clostridium per... DER_CLOP1 - GTPase Der OS=Clostridium perfringens (strain ATCC 13124 / DSM 756 / JCM 1290 / NCIMB 6125 / NCTC 82... DER_CLOPS - GTPase Der OS=Clostridium perfringens (strain SM101 / Type A) GN=der PE=3 SV=1 gi\|168217042, gi... - gi\|182380862\|gb\|EDT78341.1\| putative GTP-binding protein Era [Clostridium perfringens NCTC 8239], gi... DER_CLOPE - GTPase Der OS=Clostridium perfringens (strain 13 / Type A) GN=der PE=3 SV=1 gi\|169299237, gi... - gi\|169342731\|ref\|ZP_02863772.1\| putative GTP-binding protein Era [Clostridium perfringens C str. JGS... gi\|177908885, gi... - gi\|182625851\|ref\|ZP_02953617.1\| putative GTP-binding protein Era [Clostridium perfringens D str. JGS... gi\|170661368, gi... - gi\|170661368\|gb\|EDT14051.1\| putative GTP-binding protein Era [Clostridium perfringens E str. JGS1987... gi\|170711316, gi... - gi\|170711316\|gb\|EDT23498.1\| putative GTP-binding protein Era [Clostridium perfringens B str. ATCC 36... gi\|170714259, gi... - gi\|170714259\|gb\|EDT26441.1\| putative GTP-binding protein Era [Clostridium perfringens CPE str. F4969...	296.0	[0..112]	[556..6]
gi\|56963641, gi\|... - gi\|56963641\|ref\|YP_175372.1\| GTP-binding protein EngA [Bacillus clausii KSM-K16], gi\|56909884\|dbj\|BA...	296.0	[0..112]	[557..8]
DER_BACHD, ENGA_... - GTP-binding protein engA OS=Bacillus halodurans GN=engA PE=3 SV=1, GTPase Der OS=Bacillus halodurans... DER_BACHD - GTPase Der OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) G...	295.0	[0..112]	[557..6]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALRTLSTFP SLPRRHTTTR REPNLTVIYR NPTTSIVCKS IANSEPPVSL SERDGFAAAA  60
   61 PTPGERFLEN QRAHEAQKVV KKEIKKEKKK KKEEIIARKV VDTSVSCCYG C

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.717	a.24.18	Description not found.
View	Download	0.608	a.121.1	Tetracyclin repressor-like, C-terminal domain
View	Download	0.603	a.25.1	Ferritin-like
View	Download	0.576	a.24.18	Description not found.
View	Download	0.563	a.29.16	Description not found.
View	Download	0.560	a.7.8	GAT domain
View	Download	0.552	a.7.8	GAT domain
View	Download	0.502	a.24.9	alpha-catenin/vinculin
View	Download	0.455	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.357	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain
View	Download	0.335	b.42.1	Cytokine
View	Download	0.317	f.21.2	Fumarate reductase respiratory complex transmembrane subunits
View	Download	0.288	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like
View	Download	0.267	f.21.2	Fumarate reductase respiratory complex transmembrane subunits

Predicted Domain #2

Region A:
Residues: [112-561]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAPLQTSDVD SPGFVDLVTY ELKKKHHQLR TMICGRCQLL SHGHMITAVG GNGGYPGGKQ  60
   61 FVSADELREK LSHLRHEKAL IVKLVDIVDF NGSFLARVRD LVGANPIILV ITKIDLLPKG 120
  121 TDMNCIGDWV VEVTMRKKLN VLSVHLTSSK SLDGVSGVAS EIQKEKKGRD VYILGAANVG 180
  181 KSAFINALLK TMAERDPVAA AAQKYKPIQS AVPGTTLGPI QINAFVGGEK LYDTPGVHLH 240
  241 HRQAAVVHSD DLPALAPQNR LRGQSFDIST LPTQSSSSPK GESLNGYTFF WGGLVRIDIL 300
  301 KALPETCFTF YGPKALEIHA VPTKTATAFY EAKLGVLLTP PSGKNQMQEW KGLQSHRLLQ 360
  361 IEINDAKRPA SDVAISGLGW ISIEPIRKTR GTEPRDLNEA EHEIHICVSV PKPVEVFLRP 420
  421 TLPIGTSGTE WYQYRELTDK EEEVRPKWYF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	81.39794
Match:	2hjgA
Description:	No description for 2hjgA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits