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View Structure Prediction Details

Protein: PP285_ARATH
Organism: Arabidopsis thaliana
Length: 890 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for PP285_ARATH.

Predicted Domain #1
Region A:
Residues: [1-755]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCPLAFTFS LPSIFPFPSQ LLPFSRHKHP YLLRATPTSA TEDVASAVSG APSIFISQSR  60
   61 SPEWWIDLLR SKVRSNLLRE AVLTYVDMIV LGIKPDNYAF PALLKAVADL QDMELGKQIH 120
  121 AHVYKFGYGV DSVTVANTLV NLYRKCGDFG AVYKVFDRIS ERNQVSWNSL ISSLCSFEKW 180
  181 EMALEAFRCM LDENVEPSSF TLVSVVTACS NLPMPEGLMM GKQVHAYGLR KGELNSFIIN 240
  241 TLVAMYGKLG KLASSKVLLG SFGGRDLVTW NTVLSSLCQN EQLLEALEYL REMVLEGVEP 300
  301 DEFTISSVLP ACSHLEMLRT GKELHAYALK NGSLDENSFV GSALVDMYCN CKQVLSGRRV 360
  361 FDGMFDRKIG LWNAMIAGYS QNEHDKEALL LFIGMEESAG LLANSTTMAG VVPACVRSGA 420
  421 FSRKEAIHGF VVKRGLDRDR FVQNTLMDMY SRLGKIDIAM RIFGKMEDRD LVTWNTMITG 480
  481 YVFSEHHEDA LLLLHKMQNL ERKVSKGASR VSLKPNSITL MTILPSCAAL SALAKGKEIH 540
  541 AYAIKNNLAT DVAVGSALVD MYAKCGCLQM SRKVFDQIPQ KNVITWNVII MAYGMHGNGQ 600
  601 EAIDLLRMMM VQGVKPNEVT FISVFAACSH SGMVDEGLRI FYVMKPDYGV EPSSDHYACV 660
  661 VDLLGRAGRI KEAYQLMNMM PRDFNKAGAW SSLLGASRIH NNLEIGEIAA QNLIQLEPNV 720
  721 ASHYVLLANI YSSAGLWDKA TEVRRNMKEQ GVRKE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.0
Match: 1xi4A
Description: Clathrin D6 Coat
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [756-890]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PGCSWIEHGD EVHKFVAGDS SHPQSEKLSG YLETLWERMR KEGYVPDTSC VLHNVEEDEK  60
   61 EILLCGHSEK LAIAFGILNT SPGTIIRVAK NLRVCNDCHL ATKFISKIVD REIILRDVRR 120
  121 FHRFKNGTCS CGDYW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.045757
Match: 2gw1A
Description: No description for 2gw1A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle