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View Structure Prediction Details

Protein: CLT2_ARATH
Organism: Arabidopsis thaliana
Length: 431 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLT2_ARATH.

Description E-value Query
Range
Subject
Range
gi|7487326, gi|5... - pir||T09909 hypothetical protein T22A6.290 - Arabidopsis thaliana, gi|7269296|emb|CAB79356.1| hypoth...
204.0 [0..1] [380..1]

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Predicted Domain #1
Region A:
Residues: [1-86]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTVLMATTP PIRCLHASIP TVFRSPAIYQ VSCRSSQLFS YRSTTMMSMC FLRRSDLRSR  60
   61 FLSTPKTTSP MRRPRFSVGA STEESS

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.04
Match: 2gy5A
Description: No description for 2gy5A was found.

Predicted Domain #2
Region A:
Residues: [87-276]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPSNRNLIVA NSVVIVALAV ANRVLYKLAL VPMKQYPFFM AQLTTFGYVL IYFTILYTRR  60
   61 RLGIVTNEMM DVPKWRFAII GFLEALGVAT GMAAAAMLPG PVIPILNQTY LVWQLLFALL 120
  121 ILGRRFLLNQ IAGCLLVAVG VVVAVSSGSG ADTTLSGIGF LWPAVLVASA AFQAGASIIK 180
  181 EFVFNDAAKR 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [277-431]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LEGKSLDIFV VNSFGSGFQA LFVFLLLPFL SNLKGIPFAS LPSYLKDGAG CFFNTGAKIS  60
   61 GCDGAPILPL LYISTNLAFN ISLLHLVKIS SAIVSSLTMM LSVPLAVYIM SKPLPYLPGG 120
  121 SSLSSNFTMG CIVLVLGLLL YNIPTTPTKQ HTKTS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle