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View Structure Prediction Details

Protein: gi|42570131
Organism: Arabidopsis thaliana
Length: 813 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|42570131.

Predicted Domain #1
Region A:
Residues: [1-242]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHPFCCVTTV SDHSPSMPPL PEPQPPLPNY AADFGSARSE PIITRSASQS YNHSGQFNNN  60
   61 LIHSLSFNHH QSDVTDRLGQ RVLALPAAVR EPPVDVKIND IVGNGIAGIL YKWVNYGRGW 120
  121 RPRWFVLQDG VLSYYKIHGP DKIFVSPETE KGSKVIGDES ARMISRHNRR GGSSSSCQLR 180
  181 RKPFGEVHLK VSSVRESRSD DKRFSIFTGT KRLHLRAETR EDRTTWVEAL QAVKDMFPRM 240
  241 SN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.0
Match: 2r09A
Description: No description for 2r09A was found.

Predicted Domain #2
Region A:
Residues: [243-413]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SELMAPTNNL AMSTEKIRLR LIEEGVSELA IQDCEQIMKS EFSALQSQLV LLKQKQWLLI  60
   61 DTLRQLETEK VDLENTVVDE SQRQADNGCS GELRHEKFSG TATESDDDNE RGDAAEEEFD 120
  121 EEENTFFDTR DFLSSSSFKS SGSGFRTSSF SSDEDGFESE DDIDPSIKSI G

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [414-813]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CNYPRVKRRK NLPDPVEKEK SVSLWSMIKD NIGKDLTKVC LPVYFNEPLS SLQKCFEDLE  60
   61 YSYLLDRAFE YGKRGNSLMR ILNVAAFAVS GYASTEGRIC KPFNPLLGET YEADYPDKGL 120
  121 RFFSEKVSHH PMVVACHCDG TGWKFWGDSN LRSKFWGRSI QLDPVGVLTL QFDDGEILQW 180
  181 SKVTTSIYNL ILGKLYCDHY GTMRIEGSAE YSCKLKFKEQ SIIDRNPHQV HGIVQNKSGK 240
  241 TVATMFGKWD ESIHFVTGDC SGKGKLSEDM SGAQLLWKRS KPPGNATKYN LTRFAITLNE 300
  301 LTPGLKERLP PTDSRLRPDQ RYLENGEFEM ANTEKLRLEQ RQRQARKMQE RGWKPRWFMK 360
  361 EKGSESYRYK GGYWEAREDG SWVDCPDIFG HIDSDQQMIE 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 53.39794
Match: 1zhtA
Description: Structure of yeast oxysterol binding protein Osh4 in complex with 7-hydroxycholesterol
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle