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View Structure Prediction Details

Protein: gi|42572829
Organism: Arabidopsis thaliana
Length: 517 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42572829.

Description E-value Query
Range
Subject
Range
gi|30794100, gi|... - gi|30794100|gb|AAP40492.1| putative malonyl-CoA decarboxylase [Arabidopsis thaliana], gi|22328323|re...
802.0 [0..1] [517..1]

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Predicted Domain #1
Region A:
Residues: [1-69]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKNLAILL RARMRSNNPS KFSLSQFPEI QSNPQENHSR DHIVQNSNDF GTTGRVYDVV  60
   61 RETMHSAIS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [70-187]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASKTGVLDIT LNDFQEGYFS LSLEDREKLL LVLAKEYDVN REQVRELVKQ YLGLETPASD  60
   61 DDKGALSSVF YRIERNLRHA LRPTYEVLFE RLNTHPGGLR FLSILRADLL SILSKENT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [188-364]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSLRTLDSFL KEKLGMWLSP ATLELHQITW DDPASLLEKI VAYEAVHPIS NLLDLKRRLG  60
   61 IGRRCFGYFH PSVPGEPLIF IEVALMETVA QTIQEVLWDN PPIPENQATC ALFYSISSTQ 120
  121 PGLAGINLGK FLIKRVITLV KKDMPHVSTF ATLSPIPGFM QWLLSKLSSQ SRFAEDE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [365-517]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGTQSNSPSS TFSEKVLLPE EEHALMTLSD ESSSGSNGME VLLNLLSVKN CDWATSPRLL  60
   61 PVLEPILMRL CARYLLQEKK RGKALDSVAN FHLQNGAMVE RINWMADRSE KGIRQSGGIM 120
  121 VNYVYRLENI EDYAQSYFGS GKIHASPGIH SRL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle