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View Structure Prediction Details

Protein: RAGP2_ARATH
Organism: Arabidopsis thaliana
Length: 545 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RAGP2_ARATH.

Description E-value Query
Range
Subject
Range
gi|113547417, gi... - gi|115450691|ref|NP_001048946.1| Os03g0145000 [Oryza sativa (japonica cultivar-group)], gi|113547417...
252.0 [0..4] [545..111]

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Predicted Domain #1
Region A:
Residues: [1-545]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADILDSRPH AFSIKLWPPS LPTRKALIER ITNNFSSKTI FTEKYGSLTK DQATENAKRI  60
   61 EDIAFSTANQ QFEREPDGDG GSAVQLYAKE CSKLILEVLK KGPVAKVAAR ELISEDSVSP 120
  121 RETFFDISKG KRAFIEAEEA EELLKPLKEP GNAYTKICFS NRSFGLGAAR VAEPILASLK 180
  181 DQLKEVDLSD FVAGRPELEA LEVMNIFSDA LQGSILSSLN LSDNALGEKG VRAFGALLKS 240
  241 LSSLEELYLM NDGISKEAAQ AVSELIPSTE NLRVLHFHNN MTGDEGALAI AEVVKRSPLL 300
  301 ENFRCSSTRV GSKGGIALSE ALEHCTHMEK LDLRDNMFGT EAGVSLSKTL SSFKHMTELY 360
  361 LSYLNLEDEG AIAIVNALKE SASPIEVLEM AGNDITVEAA SAIAACVAAK QDLNKLNLSE 420
  421 NELKDEGCVQ IANCIEEGHS KLQYIDMSTN YIRRAGARAL AHVVVKKEAF KLLNIDGNII 480
  481 SEEGIEELKE IFKKSPELLG ALDENDPDGE EDDDDEEDEE DEENEGNGNG ELESKLKNLE 540
  541 VNQED

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.39794
Match: 1dfjI
Description: Ribonuclease inhibitor
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle