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View Structure Prediction Details

Protein: CLT1_ARATH
Organism: Arabidopsis thaliana
Length: 447 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLT1_ARATH.

Description E-value Query
Range
Subject
Range
gi|21553716 - gi|21553716|gb|AAM62809.1| unknown [Arabidopsis thaliana]
213.0 [0..1] [447..1]

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Predicted Domain #1
Region A:
Residues: [1-159]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTSSDRLI AGLTASIGSI ESRYANPAQS VSLICRNQIN GAPPIVLRSS RRSRLWLIEA  60
   61 IPPAKSWNGS NDGDEDIKKS DTRNYAIGGT GGHAVAGKDD RTMEIVIAAA TTAALGVGNR 120
  121 VLYKLALIPL KQYPFFLAQL STFGYVAVYF SILYFRYRA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [160-249]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GIVTKEMLSV PKLPFLIVGV LESLALAAGM AAASNLSGPS TTVLSQTFLV WQILFSIIFL  60
   61 GRRYRINQIL GCTLVAFGVI VSVASGSGAA 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.42
Match: 2i68A
Description: No description for 2i68A was found.

Predicted Domain #3
Region A:
Residues: [250-447]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSFKDTGILW SLLMVFSFLL QGADTVMKEV IFLDSKKRLK GASLDLFVVN SYGSIFQVIC  60
   61 IALLLPFLSK LWGIPFNQLP SYIRDGGACF LNIGSRITGC EGAPLLPVMF VMMNMAYNIS 120
  121 LLRLIKISSA VVSSLASTVS VPIAVYCFTL PLPYLGVAST LPRGFVAGTI ILVVGMLLYA 180
  181 WTPSTNTSDS IIPSPPST

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle