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View Structure Prediction Details

Protein: PME63_ARATH
Organism: Arabidopsis thaliana
Length: 338 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PME63_ARATH.

Description E-value Query
Range
Subject
Range
PME18_ARATH - Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=3
356.0 [0..4] [334..192]

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Predicted Domain #1
Region A:
Residues: [1-338]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGYNYVSLIV TILLVVITSP VVFGNDAAPI PENKGRIEQW FNTNVKQNGR GHFKTITEAI  60
   61 NSVRAGNTRR VIIKIGPGVY KEKVTIDRSK PFITLYGHPN AMPVLTFDGT AAQYGTVDSA 120
  121 TLIVLSDYFM AVNIILKNSA PMPDGKRKGA QALSMRISGN KAAFYNCKFY GYQDTICDDT 180
  181 GNHFFKDCYI EGTFDFIFGS GRSLYLGTQL NVVGDGIRVI TAHAGKSAAE KSGYSFVHCK 240
  241 VTGTGTGIYL GRSWMSHPKV VYAYTDMSSV VNPSGWQENR EAGRDKTVFY GEYKCTGTGS 300
  301 HKEKRVKYTQ DIDDIEAKYF ISLGYIQGSS WLLPPPSF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 84.154902
Match: 1xg2A
Description: Crystal structure of the complex between pectin methylesterase and its inhibitor protein
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle