YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|88011191, gi\|...
Organism:	Arabidopsis thaliana
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|88011191, gi|....

Description	E-value	Query Range	Subject Range
gi\|49119498 - gi\|49119498\|gb\|AAH73619.1\| Eps15R protein [Xenopus laevis]	100.0	[0..4]	[128..401]
Eps-15-PB - The gene Epidermal growth factor receptor pathway substrate clone 15 is referred to in FlyBase by th...	97.0	[0..10]	[123..449]
gi\|38107489, gi\|... - gi\|39973273\|ref\|XP_368027.1\| hypothetical protein MG07931.4 [Magnaporthe grisea 70-15], gb\|EAA53654....	96.0	[0..8]	[123..3]
gi\|50761168 - gi\|50761168\|ref\|XP_418263.1\| PREDICTED: similar to epidermal growth factor receptor pathway substrat...	96.0	[0..4]	[128..397]
gi\|50511093 - gi\|50511093\|dbj\|BAD32532.1\| mKIAA1758 protein [Mus musculus]	95.0	[0..4]	[124..113]
gi\|76621154 - gi\|76621154\|ref\|XP_876634.1\| PREDICTED: similar to epidermal growth factor receptor pathway substrat...	95.0	[0..4]	[128..402]
gi\|109123809 - gi\|109123809\|ref\|XP_001113811.1\| PREDICTED: similar to epidermal growth factor receptor pathway subs...	95.0	[0..4]	[128..507]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSTVRDLQ RDLENKANDL GKIQKDIGKN HQLRKKYTIQ LGENELVLKE LDLLEEDANV  60
   61 YKLIGPVLVK QDLAEANANV RKRIEYISAE LKRLDAILQD MEEKQNNKRE TIMKLQQRLQ 120
  121 TIQAGKAKA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.522879
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits