| Protein: | PPD4_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 260 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PPD4_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
295.0 | [0..2] | [260..1] |
|
Region A: Residues: [1-110] |
1 11 21 31 41 51
| | | | | |
1 MMETALLRYC VNFSGHKKIS AHQRSNSEIP KTSPGGCEDE WCARVLSRRS VMASGLVSST 60
61 TALAFPREGL AVVKQGLLAG RVPGLSEPDE EGWRTYRRPD EKSGGHGVGW
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.544 | a.158.1 | F-box domain |
| View | Download | 0.447 | a.64.1 | Saposin |
| View | Download | 0.383 | a.28.3 | Retrovirus capsid protein C-terminal domain |
| View | Download | 0.260 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.245 | a.3.1 | Cytochrome c |
|
Region A: Residues: [111-260] |
1 11 21 31 41 51
| | | | | |
1 SPIIPYAFSV PQDWNEVPVS IADLGGTEID LRFASPKEGR LSVIVAPVLR FADNLGDDVK 60
61 IENIGQPAKV INAFGPEVIG ENVEGKVLSS NVAEHDGRLY YQFELEPPHV LITATAAGNR 120
121 LYLFSVTGNG LQWKRHYKDL KRIASSFRIV
|
| Detection Method: | |
| Confidence: | 48.0 |
| Match: | 1v2bA |
| Description: | Crystal Structure of PsbP Protein in the Oxygen-Evolving Complex of Photosystem II from Higher Plants |
Matching Structure (courtesy of the PDB): |
|
