YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|132420
Organism:	Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|132420.

Description	E-value	Query Range	Subject Range
gi\|15788265 - gi\|15788265\|gb\|AAL07716.1\| rev protein [Human immunodeficiency virus 1]	231.0	[0..1]	[116..1]
REV_HV1B1 - Protein Rev OS=Human immunodeficiency virus type 1 group M subtype B (isolate BH10) GN=rev PE=1 SV=1 gi\|16798508 - gi\|16798508\|gb\|AAL29461.1\| rev protein [synthetic construct] gi\|326387 - gi\|326387\|gb\|AAA44200.1\| rev protein [Human immunodeficiency virus 1]	205.0	[0..1]	[116..1]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRSGDSDE DLLKAVRLIK FLYQSNPPPN PEGTRQARRN RRRRWRERQR QIHSISERIL  60
   61 STYLGRSAEP VPLQLPPLER LTLDCNEDCG TSGTQGVGSP QILVESPTVL ESGTKE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	64.022276
Match:	PF00424.9
Description:	No description for PF00424.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits