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View Structure Prediction Details

Protein: UBP24_ARATH
Organism: Arabidopsis thaliana
Length: 551 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBP24_ARATH.

Description E-value Query
Range
Subject
Range
gi|115497674, gi... - gi|115497674|ref|NP_001069594.1| ubiquitin specific peptidase 8 [Bos taurus], gi|113911783|gb|AAI225...
295.0 [0..10] [548..552]

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Predicted Domain #1
Region A:
Residues: [1-137]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKKVFVFG SFTEHETRSF FEQKPTKDPQ NSKDKCVGSI QFGSLNLAAE NSSVNTNGEL  60
   61 KKGEADGTVK SAGSQERLDA SRPASSDKNN DSDAKLPRKN SLRVPEHVVQ NGIIKEISES 120
  121 NKSLNNGVAV KTDPIGL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [138-551]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DNLSMSDGES DPVYKASSSK FQALDNEDFS SDSSSGSIQR KKNLKVPTES VPPVKDFTPR  60
   61 GLINAGNLCF LNATLQALLS CSPFVQLLQK IQLQDIPKAD SPTLAAFSEF ISELDVPSSS 120
  121 SIRNNVTVVE AGRPFRPAMF EGVLRNFTPD VLNNMSGRPR QEDAQEFLSF IMDQMHDELL 180
  181 KLKEQSPKVT ASKSSVISSA NDDGDEWETV GPKNKSAVTR TQSFVPSELS EIFGGQLKSV 240
  241 VKAKGTKASA TVQPYLLLHL DIHPDGVQGI EDALHLFSAQ EDLEGYRASV TGKTGVVSAS 300
  301 KSIKIQKLSK IMILHLMRFS YGSQGSTKLR KGVKFPLELN LNRSHLVSLS NESLRYELVA 360
  361 TITHHGWDPS KGHYTTDARR KNGQWLRFDD ASVTPIGTKL VLHDQAYVLF YKQV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 67.0
Match: 2gfoA
Description: No description for 2gfoA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle