| Protein: | TPC1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 733 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TPC1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
450.0 | [0..41] | [719..585] |
|
Region A: Residues: [1-413] |
1 11 21 31 41 51
| | | | | |
1 MEDPLIGRDS LGGGGTDRVR RSEAITHGTP FQKAAALVDL AEDGIGLPVE ILDQSSFGES 60
61 ARYYFIFTRL DLIWSLNYFA LLFLNFFEQP LWCEKNPKPS CKDRDYYYLG ELPYLTNAES 120
121 IIYEVITLAI LLVHTFFPIS YEGSRIFWTS RLNLVKVACV VILFVDVLVD FLYLSPLAFD 180
181 FLPFRIAPYV RVIIFILSIR ELRDTLVLLS GMLGTYLNIL ALWMLFLLFA SWIAFVMFED 240
241 TQQGLTVFTS YGATLYQMFI LFTTSNNPDV WIPAYKSSRW SSVFFVLYVL IGVYFVTNLI 300
301 LAVVYDSFKE QLAKQVSGMD QMKRRMLEKA FGLIDSDKNG EIDKNQCIKL FEQLTNYRTL 360
361 PKISKEEFGL IFDELDDTRD FKINKDEFAD LCQAIALRFQ KEEVPSLFEH FPQ
|
| Detection Method: |  |
| Confidence: | 57.39794 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [414-733] |
1 11 21 31 41 51
| | | | | |
1 IYHSALSQQL RAFVRSPNFG YAISFILIIN FIAVVVETTL DIEESSAQKP WQVAEFVFGW 60
61 IYVLEMALKI YTYGFENYWR EGANRFDFLV TWVIVIGETA TFITPDENTF FSNGEWIRYL 120
121 LLARMLRLIR LLMNVQRYRA FIATFITLIP SLMPYLGTIF CVLCIYCSIG VQVFGGLVNA 180
181 GNKKLFETEL AEDDYLLFNF NDYPNGMVTL FNLLVMGNWQ VWMESYKDLT GTWWSITYFV 240
241 SFYVITILLL LNLVVAFVLE AFFTELDLEE EEKCQGQDSQ EKRNRRRSAG SKSRSQRVDT 300
301 LLHHMLGDEL SKPECSTSDT
|
| Detection Method: | |
| Confidence: | 4.58 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
| Matching Structure (courtesy of the PDB): |
|
