YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|23342428\|emb\|...
Organism:	Rattus sp.
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|23342428|emb|....

Description	E-value	Query Range	Subject Range
gi\|191126 - gi\|191126\|gb\|AAA36995.1\| 14 kDa beta-galactoside-binding lectin LEG1_CRIGR - Galectin-1 OS=Cricetulus griseus GN=LGALS1 PE=1 SV=2	175.0	[0..1]	[135..1]
gi\|30584667, gi\|... - gi\|61369162\|gb\|AAX43294.1\| lectin galactoside-binding soluble 1 [synthetic construct], gi\|61369156\|g...	172.0	[0..1]	[135..1]
LGALS1 - lectin, galactoside-binding, soluble, 1 gi\|61358976, gi\|... - gi\|61358983\|gb\|AAX41650.1\| lectin galactoside-binding soluble 1 [synthetic construct], gi\|61358976\|g... HGNC:6561\|MIM:15... - galactoside-binding, soluble, 1 gi\|114686337, gi... - gi\|114686337\|ref\|XP_001162104.1\| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes], gi\|114...	172.0	[0..1]	[135..1]
gi\|109149582 - gi\|109149582\|ref\|XP_001083427.1\| PREDICTED: lectin, galactoside-binding, soluble, 1 (galectin 1) iso...	172.0	[0..1]	[135..1]
LEG1_MOUSE - Galectin-1 OS=Mus musculus GN=Lgals1 PE=1 SV=3	172.0	[0..1]	[135..1]
LEG1_SHEEP - Galectin-1 OS=Ovis aries GN=LGALS1 PE=1 SV=2	171.0	[0..1]	[135..1]
LEG1_PONPY - Galectin-1 - Pongo pygmaeus (Orangutan) LEG1_PONAB - Galectin-1 OS=Pongo abelii GN=LGALS1 PE=2 SV=3	170.0	[0..1]	[135..1]
LEG1_BOVIN - Galectin-1 OS=Bos taurus GN=LGALS1 PE=1 SV=2	170.0	[0..1]	[135..1]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACGLVASNL NLKPGECLKV RGELAPDAKS FVLNLGKDSN NLCLHFNPRF NAHGDANTIV  60
   61 CNSKDDGTWG TEQRETAFPF QPGSITEVCI TFDQADLTIK LPDGHEFKFP NRLNMEAINY 120
  121 MAADGDFKIK CVAFE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.39794
Match:	1gzwA
Description:	X-RAY CRYSTAL STRUCTURE OF HUMAN GALECTIN-1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits