YRC Public Data Repository - Protein Structure Prediction

Protein:	GLTP2_ARATH
Organism:	Arabidopsis thaliana
Length:	223 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLTP2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|73976553 - gi\|73976553\|ref\|XP_539498.2\| PREDICTED: similar to pleckstrin homology domain containing, family A (...	226.0	[0..10]	[223..555]
gi\|114612637 - gi\|114612637\|ref\|XP_527709.2\| PREDICTED: pleckstrin homology domain containing, family A (phosphoino...	224.0	[0..10]	[223..302]
gi\|109066999 - gi\|109066999\|ref\|XP_001086395.1\| PREDICTED: similar to pleckstrin homology domain containing, family...	224.0	[0..10]	[223..302]
gi\|34872669, gi\|... - ref\|XP_213793.2\| similar to Glycolipid transfer protein [Rattus norvegicus], gi\|109496081\|ref\|XP_213...	223.0	[0..22]	[223..139]
PKHA8_BOVIN - Pleckstrin homology domain-containing family A member 8 OS=Bos taurus GN=PLEKHA8 PE=3 SV=2	223.0	[0..10]	[223..303]
gi\|109099519 - gi\|109099519\|ref\|XP_001089145.1\| PREDICTED: glycolipid transfer protein isoform 2 [Macaca mulatta] GLTP_PANTR - Glycolipid transfer protein OS=Pan troglodytes GN=GLTP PE=2 SV=1 GLTP - glycolipid transfer protein CCDS9136.1_1 - null ENSCJAT00000018919 - null	220.0	[0..23]	[223..1]

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Predicted Domain #1

Region A:
Residues: [1-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRKRYEMEK KKKTEIQTAI EELSVFIVTK PADKTEATHI PLRPILSFCS LIIQVLDKIG  60
   61 PTMAVLRQDI DQNIQRLEKF YETDSCVYSN LAEILKKEKE EGTSKMVASC GRALFWLTRT 120
  121 MDFTAGLLRL LSKEMSSKME ELVEECYMTT LKPHHGWIAS AAFKVCLKLV PDNKTFMEAI 180
  181 GARDESYDTL REDIDTLSSL LTPILKEIYF VLEQYGLSRL RSM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.522879
Match:	1swxA
Description:	Crystal structure of a human glycolipid transfer protein in apo-form
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits