YRC Public Data Repository - Protein Structure Prediction

Protein:	H3C_CAIMO
Organism:	Cairina moschata
Length:	136 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for H3C_CAIMO.

Description	E-value	Query Range	Subject Range
gi\|88943485 - gi\|88943485\|ref\|XP_497711.2\| PREDICTED: similar to H3 histone, family 2 isoform 2 [Homo sapiens]	227.0	[0..1]	[136..45]
gi\|76612880 - gi\|76612880\|ref\|XP_871849.1\| PREDICTED: similar to H3 histone, family 2 isoform 2 [Bos taurus]	220.0	[0..1]	[136..207]
gi\|50728592 - gi\|50728592\|ref\|XP_416193.1\| PREDICTED: similar to histone protein Hist2h3c1 [Gallus gallus]	218.0	[0..1]	[136..621]
gi\|74003971, gi\|... - gi\|74003975\|ref\|XP_859248.1\| PREDICTED: similar to histone 1, H2ai (predicted) isoform 3 [Canis fami...	213.0	[0..1]	[136..1]
gi\|148706930, gi... - gi\|62739244\|gb\|AAH94041.1\| Histone cluster 2, H3c1 [Mus musculus], gi\|30061401\|ref\|NP_835734.1\| hist...	212.0	[0..1]	[136..46]

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Predicted Domain #1

Region A:
Residues: [1-136]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARTKQTACK STGRKAPRKQ LATKAAHKSA PAMGGVKKPH CYRPGTVALH EIHRYQKSTE  60
   61 LLICKLPFQR LVREIAQDFK TDLRFQSSAV MALQEASEAY LVGLFEDTNL CAIHAKRVSI 120
  121 MPKDIQLTRR IRGERA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.045757
Match:	1eqzC
Description:	Histone H3
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits