YRC Public Data Repository - Protein Structure Prediction

Protein:	DPM2_CRIGR
Organism:	Cricetulus griseus
Length:	84 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DPM2_CRIGR.

Description	E-value	Query Range	Subject Range
gi\|50757410 - gi\|50757410\|ref\|XP_415511.1\| PREDICTED: similar to RIKEN cDNA C230093N12 [Gallus gallus]	150.0	[0..1]	[83..531]
gi\|88181693, gi\|... - gi\|88181693\|gb\|EAQ89161.1\| hypothetical protein CHGG_05780 [Chaetomium globosum CBS 148.51], gi\|1161...	127.0	[0..6]	[78..105]
DPM2_BOVIN - Dolichol phosphate-mannose biosynthesis regulatory protein OS=Bos taurus GN=DPM2 PE=3 SV=3	116.0	[0..1]	[84..1]
gi\|62858779, gi\|... - gi\|62858779\|ref\|NP_001016297.1\| dolichyl-phosphate mannosyltransferase 2 [Xenopus (Silurana) tropica...	113.0	[0..1]	[84..1]
gi\|73968174 - gi\|73968174\|ref\|XP_851419.1\| PREDICTED: similar to phosphatidylinositol-4-phosphate 5-kinase-like 1 ...	112.0	[0..2]	[73..133]
gi\|125816302, gi... - gi\|62531211\|gb\|AAH93353.1\| Dpm2 protein [Danio rerio], gi\|170932542\|ref\|NP_001116318.1\| dolichyl-pho...	111.0	[0..1]	[81..1]
gi\|54261480 - gi\|54261480\|gb\|AAH84411.1\| LOC495274 protein [Xenopus laevis]	103.0	[0..1]	[84..1]
gi\|197692359, gi... - gi\|81294280\|gb\|AAI07864.1\| Dolichyl-phosphate mannosyltransferase polypeptide 2, regulatory subunit ...	100.0	[0..1]	[84..1]
gi\|46125671, gi\|... - gi\|46125671\|ref\|XP_387389.1\| hypothetical protein FG07213.1 [Gibberella zeae PH-1], gi\|42554968\|gb\|E...	100.0	[0..6]	[78..3]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATGTDQVVG FGLVAVSLII FTYYTTWVIL LPFIDSQHVI HKYFLPRAYA VLIPLATGLL  60
   61 LLLFVGLFIT YVMLKSRRLT KKAQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	60.275724
Match:	PF07297.3
Description:	No description for PF07297.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.554	0.055	integral to endoplasmic reticulum membrane	a.24.3	Cytochromes
View	Download	0.620	0.041	integral to endoplasmic reticulum membrane	a.64.1	Saposin
View	Download	0.764	0.008	integral to endoplasmic reticulum membrane	a.2.8	Eukaryotic DNA topoisomerase I, dispensable insert domain
View	Download	0.560	0.006	integral to endoplasmic reticulum membrane	a.151.1	Glutamyl tRNA-reductase dimerization domain
View	Download	0.675	N/A	N/A	a.2.8	Eukaryotic DNA topoisomerase I, dispensable insert domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits