YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|29726554
Organism:	Escherichia coli
Length:	291 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29726554.

Description	E-value	Query Range	Subject Range
HCHA_ECOLI - (P31658) Chaperone protein hchA (Hsp31) (EcHsp31)	212.0	[0..2]	[279..1]
HCHA_ECOBW - Protein deglycase HchA OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=hchA PE=3 SV=1 gi\|253324131, gi... - gi\|253773087\|ref\|YP_003035918.1\| ThiJ/PfpI domain protein [Escherichia coli BL21(DE3)], gi\|253324131... EG11755 - glyoxalase III and Hsp31 molecular chaperone / Glyoxalase III and molecular chaperone Hsp31, heat-in... HCHA_ECODH - Protein deglycase HchA OS=Escherichia coli (strain K12 / DH10B) GN=hchA PE=3 SV=1 EG11755 - glyoxalase III and Hsp31 molecular chaperone / Glyoxalase III and molecular chaperone Hsp31, heat-in... gi\|194420914, gi... - gi\|83584522\|ref\|ZP_00923198.1\| COG0693: Putative intracellular protease/amidase [Escherichia coli 10... gi\|85675171, gi\|... - gi\|89108795\|ref\|AP_002575.1\| Hsp31 molecular chaperone [Escherichia coli str. K-12 substr. W3110], g... HCHA_ECOLI - Chaperone protein hchA (Hsp31) (EcHsp31) - Escherichia coli	212.0	[0..2]	[279..2]
gi\|168752200, gi... - gi\|188013897\|gb\|EDU52019.1\| chaperone protein HchA [Escherichia coli O157:H7 str. EC4113], gi\|168752... gi\|189366017, gi... - gi\|189366017\|gb\|EDU84433.1\| chaperone protein HchA [Escherichia coli O157:H7 str. EC4501], gi\|168763... gi\|168757598, gi... - gi\|189355439\|gb\|EDU73858.1\| chaperone protein HchA [Escherichia coli O157:H7 str. EC4401], gi\|168757... gi\|38492413, gi\|... - gi\|38492414\|pdb\|1IZY\|B Chain B, Crystal Structure Of Hsp31, gi\|38492413\|pdb\|1IZY\|A Chain A, Crystal ... HCHA_ECO57 - Protein deglycase HchA OS=Escherichia coli O157:H7 GN=hchA PE=3 SV=3 HCHA_ECO5E - Protein deglycase HchA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=hchA PE=3 SV=1 gi\|208819638, gi... - gi\|208819638\|ref\|ZP_03259958.1\| chaperone protein HchA [Escherichia coli O157:H7 str. EC4042], gi\|20... gi\|217318257, gi... - gi\|217328910\|ref\|ZP_03444991.1\| chaperone protein HchA [Escherichia coli O157:H7 str. TW14588], gi\|2... gi\|254593019, gi... - gi\|254793619\|ref\|YP_003078456.1\| Hsp31 molecular chaperone [Escherichia coli O157:H7 str. TW14359], ... gi\|195939272 - gi\|195939272\|ref\|ZP_03084654.1\| chaperone protein HchA [Escherichia coli O157:H7 str. EC4024] gi\|189376130, gi... - gi\|189376130\|gb\|EDU94546.1\| chaperone protein HchA [Escherichia coli O157:H7 str. EC508], gi\|1688017... gi\|13362173, gi\|... - gi\|15831959\|ref\|NP_310732.1\| chaperone protein HchA [Escherichia coli O157:H7 str. Sakai], gi\|133621... gi\|208816695, gi... - gi\|208816695\|ref\|ZP_03257815.1\| chaperone protein HchA [Escherichia coli O157:H7 str. EC4045], gi\|20... gi\|208810346, gi... - gi\|208810346\|ref\|ZP_03252222.1\| chaperone protein HchA [Escherichia coli O157:H7 str. EC4206], gi\|20... gi\|168777724, gi... - gi\|187767088\|gb\|EDU30932.1\| chaperone protein HchA [Escherichia coli O157:H7 str. EC4196], gi\|168777... gi\|168771622, gi... - gi\|189359658\|gb\|EDU78077.1\| chaperone protein HchA [Escherichia coli O157:H7 str. EC4486], gi\|168771... gi\|168789329, gi... - gi\|189370993\|gb\|EDU89409.1\| chaperone protein HchA [Escherichia coli O157:H7 str. EC869], gi\|1687893... gi\|188999309, gi... - gi\|188999309\|gb\|EDU68295.1\| chaperone protein HchA [Escherichia coli O157:H7 str. EC4076], gi\|168783...	212.0	[0..2]	[279..2]
gi\|75510988, gi\|... - gi\|75510988\|ref\|ZP_00733744.1\| COG0693: Putative intracellular protease/amidase [Escherichia coli 53... gi\|75215142, gi\|... - gi\|75215142\|ref\|ZP_00713590.1\| COG0693: Putative intracellular protease/amidase [Escherichia coli E1...	211.0	[0..2]	[279..2]
gi\|194418062, gi... - gi\|83569517\|ref\|ZP_00920969.1\| COG0693: Putative intracellular protease/amidase [Shigella dysenteria...	211.0	[0..2]	[280..2]
HCHA_ECOLC - Protein deglycase HchA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=hchA PE=3 SV=1 HCHA_ECOSM - Protein deglycase HchA OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=hchA PE=3 SV=1 gi\|124532075, gi... - gi\|124532075\|ref\|ZP_01702089.1\| ThiJ/PfpI domain protein [Escherichia coli B], gi\|124498188\|gb\|EAY45... HCHA_ECO81 - Protein deglycase HchA OS=Escherichia coli O81 (strain ED1a) GN=hchA PE=3 SV=1 HCHA_ECOLU - Protein deglycase HchA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=hchA PE=3 SV=1 gi\|193066638, gi... - gi\|75255227\|ref\|ZP_00727075.1\| COG0693: Putative intracellular protease/amidase [Escherichia coli E2... gi\|190900717, gi... - gi\|75227465\|ref\|ZP_00714232.1\| COG0693: Putative intracellular protease/amidase [Escherichia coli B7... HCHA_ECOHS - Protein deglycase HchA OS=Escherichia coli O9:H4 (strain HS) GN=hchA PE=3 SV=1 HCHA_SHIB3 - Protein deglycase HchA OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=hchA PE=3 SV=1	211.0	[0..2]	[279..2]
gi\|25501075 - gi\|25501075\|pir\|\|H85814 hypothetical protein yedU [imported] - Escherichia coli (strain O157:H7, su... gi\|15802400, gi\|... - gi\|15802400\|ref\|NP_288426.1\| chaperone protein HchA [Escherichia coli O157:H7 EDL933], gi\|12516075\|g...	211.0	[0..2]	[279..2]
HCHA_SHISS - Protein deglycase HchA OS=Shigella sonnei (strain Ss046) GN=hchA PE=3 SV=1	211.0	[0..2]	[280..2]
HCHA_ECOSE - Protein deglycase HchA OS=Escherichia coli (strain SE11) GN=hchA PE=3 SV=1 HCHA_ECO24 - Protein deglycase HchA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=hchA PE=3 SV=1	210.0	[0..2]	[280..2]
HCHA_ECOL5 - Protein deglycase HchA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=hchA PE=3 SV=1 gi\|226900682, gi... - gi\|237705925\|ref\|ZP_04536406.1\| yedU [Escherichia sp. 3_2_53FAA], gi\|226900682\|gb\|EEH86941.1\| yedU [... gi\|227837178, gi... - gi\|227885605\|ref\|ZP_04003410.1\| hydrolase [Escherichia coli 83972], gi\|227837178\|gb\|EEJ47644.1\| hydr... HCHA_ECO7I - Protein deglycase HchA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=hchA PE=3 SV=1 HCHA_ECOL6 - Chaperone protein hchA OS=Escherichia coli O6 GN=hchA PE=2 SV=2 HCHA_ECOL6 - Protein deglycase HchA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=hchA PE=3 S... gi\|75239142, gi\|... - gi\|75239142\|ref\|ZP_00723119.1\| COG0693: Putative intracellular protease/amidase [Escherichia coli F1...	210.0	[0..2]	[280..2]

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Predicted Domain #1

Region A:
Residues: [1-291]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 XTVQTSKNPQ VDIAEDNAFF PSEYSLSQYT SPVSDLDGVD YPKPYRGKHK ILVIAADERY  60
   61 LPTDNGKLFS TGNHPIETLL PLYHLHAAGF EFEVATISGL XTKFEYWAXP HKDEKVXPFF 120
  121 EQHKSLFRNP KKLADVVASL NADSEYAAIF VPGGHGALIG LPESQDVAAA LQWAIKNDRF 180
  181 VISLCHGPAA FLALRHGDNP LNGYSICAFP DAADKQTPEI GYXPGHLTWY FGEELKKXGX 240
  241 NIINDDITGR VHKDRKLLTG DSPFAANALG KLAAQEXLAA YAGLEHHHHH H

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.0
Match:	1n57A
Description:	HSP31 (HchA; YedU)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.403416821073812	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: