| Protein: | APC5_PONAB |
| Organism: | Pongo abelii |
| Length: | 755 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for APC5_PONAB.
| Description | E-value | Query Range |
Subject Range |
|
|
0.0 | [1..755] | [56..807] |
|
|
0.0 | [1..755] | [1..755] |
|
|
0.0 | [1..755] | [1..795] |
|
|
0.0 | [1..755] | [1..755] |
|
Region A: Residues: [1-189] |
1 11 21 31 41 51
| | | | | |
1 MASVHESLYF NPMMTNGVVH ANVFGIKDWV TPYKIAVLVL LNEMSRTGEG AVSLMERRRL 60
61 NQLLLPLLQG PDITLSKLYK LIEESCPQLA NSVQIRIKLM AEGELKDMEQ FFDDLSDSFS 120
121 GTEPEVHKTS VVGLFLRHMI LAYSKLSFSQ VFKLYTALQQ YFQNGEKKTV EDADMELTSR 180
181 DEGERKMEK
|
| Detection Method: |  |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [190-314] |
1 11 21 31 41 51
| | | | | |
1 EELDVSVREE EVSCSGPLSQ KQAEFFLSQQ ASLLKNDETK ALTPASLQKE LNNLLKFNPD 60
61 FAEAHYLSYL NNLRVQDVFS STHSLLHYFD RLILTGAESK SNGEEGYGRS LRYAALNLAA 120
121 LHCRF
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.861 | a.7.6 | Ribosomal protein S20 |
|
Region A: Residues: [315-755] |
1 11 21 31 41 51
| | | | | |
1 GHYQQAELAL QEAIRIAQES NDHVCLQHCL SWLYVLGQKR SDSYVLLEHS VKKAVHFGLP 60
61 YLASLGIQSL VQQRAFAGKT ANKLMDALKD SDLLHWKHSL SELIDISIAQ KTAIWRLYGR 120
121 STMALQQAQM LLSMNSLEAV NAGVQQNNTE SFAVALCHLA ELHAEQGCFA AASEVLKHLK 180
181 ERFPPNSQHA QLWMLCDQKI QFDRAMNDGK YHLADSLVTG ITALNSIEGV YRKAVVLQAQ 240
241 NQMSEAHKLL QKLLVHCQKL KNTEMVISVL LSVAELYWRS SSPTIALPML LQALALSKEY 300
301 RLQYLASETV LNLAFAQLIL GIPEQALSLL HMAIEPILAD GAILDKGRAM FLVAKCQVAS 360
361 AASYDQPKKA EALEAAIENL NEAKNYFAKV DCKERIRDVV YFQARLYHTL GKTQERNRCA 420
421 MLFRQLHQEL PSHGVPLINH L
|
| Detection Method: | |
| Confidence: | 26.30103 |
| Match: | 1w3bA |
| Description: | The superhelical TPR domain of O-linked GlcNAc transferase reveals structural similarities to importin alpha. |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| ubiquitin-protein ligase activity | 4.81092926633672 | bayes_pls_golite062009 |
| small conjugating protein ligase activity | 4.73323750175899 | bayes_pls_golite062009 |
| acid-amino acid ligase activity | 4.038463864925 | bayes_pls_golite062009 |
| ligase activity, forming carbon-nitrogen bonds | 3.25461549315207 | bayes_pls_golite062009 |
| binding | 2.52126334054344 | bayes_pls_golite062009 |
| ligase activity | 1.72049482453565 | bayes_pls_golite062009 |
| protein binding | 1.52807685989528 | bayes_pls_golite062009 |
| hydrolase activity | 0.619711232527193 | bayes_pls_golite062009 |
| enzyme binding | 0.44905827271946 | bayes_pls_golite062009 |
| nucleic acid binding | 0.41706917101675 | bayes_pls_golite062009 |
| transcription regulator activity | 0.322371143360832 | bayes_pls_golite062009 |
| DNA binding | 0.17736976899009 | bayes_pls_golite062009 |
