YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|34809639, gi\|...
Organism:	Bacillus subtilis
Length:	291 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34809639, gi|....

Description	E-value	Query Range	Subject Range
PURR_BACSU - Pur operon repressor OS=Bacillus subtilis GN=purR PE=1 SV=1 gi\|221321374 - gi\|221321374\|ref\|ZP_03602668.1\| purine operon repressor [Bacillus subtilis subsp. subtilis str. SMY] gi\|221312178 - gi\|221312178\|ref\|ZP_03593983.1\| purine operon repressor [Bacillus subtilis subsp. subtilis str. NCIB... PURR_BACSU - Pur operon repressor OS=Bacillus subtilis (strain 168) GN=purR PE=1 SV=1 gi\|221317111 - gi\|221317111\|ref\|ZP_03598405.1\| purine operon repressor [Bacillus subtilis subsp. subtilis str. JH64...	243.0	[0..1]	[285..1]
gi\|29374716, gi\|... - gi\|29374716\|ref\|NP_813868.1\| purine operon repressor [Enterococcus faecalis V583], gi\|29342174\|gb\|AA... gi\|229304214, gi... - gi\|229550648\|ref\|ZP_04439373.1\| purine operon repressor [Enterococcus faecalis ATCC 29200], gi\|22930... gi\|238829172, gi... - gi\|238858210\|ref\|ZP_04648431.1\| pur operon repressor [Enterococcus faecalis TUSoD Ef11], gi\|23882917... gi\|227518055, gi... - gi\|227518055\|ref\|ZP_03948104.1\| purine operon repressor [Enterococcus faecalis TX0104], gi\|227074491... gi\|229307805, gi... - gi\|229547076\|ref\|ZP_04435801.1\| purine operon repressor [Enterococcus faecalis TX1332], gi\|229307805...	226.0	[0..1]	[272..1]
gi\|52346406, gi\|... - gi\|52783904\|ref\|YP_089733.1\| purine operon repressor [Bacillus licheniformis ATCC 14580], gi\|5234640...	225.0	[0..1]	[273..1]
gi\|56378417, gi\|... - gi\|56418575\|ref\|YP_145893.1\| purine operon repressor [Geobacillus kaustophilus HTA426], gi\|56378417\|...	223.0	[0..1]	[269..1]
gi\|16799308 - gi\|16799308\|ref\|NP_469576.1\| purine operon repressor [Listeria innocua Clip11262] gi\|16412650, gi\|... - pir\|\|AH1461 PurR, transcription repressor of purine operon of B. subtilis homolog lin0231 [imported]...	222.0	[0..1]	[270..1]
gi\|224503488 - gi\|224503488\|ref\|ZP_03671795.1\| purine operon repressor [Listeria monocytogenes FSL R2-561] gi\|224500355 - gi\|224500355\|ref\|ZP_03668704.1\| purine operon repressor [Listeria monocytogenes Finland 1988] gi\|47096185, gi\|... - gi\|47096185\|ref\|ZP_00233784.1\| Pur operon transcriptional repressor [Listeria monocytogenes str. 1/2... gi\|16802238 - gi\|16802238\|ref\|NP_463723.1\| purine operon repressor [Listeria monocytogenes EGD-e] gi\|16409549, gi\|... - pir\|\|AI1098 PurR, transcription repressor of purine operon of B. subtilis homolog lmo0192 [imported]... gi\|47092875, gi\|... - gi\|47092875\|ref\|ZP_00230658.1\| Pur operon transcriptional repressor [Listeria monocytogenes str. 4b ... gi\|46906424, gi\|... - gi\|46906424\|ref\|YP_012813.1\| purine operon repressor [Listeria monocytogenes str. 4b F2365], gi\|4687... gi\|116871581, gi... - gi\|116871581\|ref\|YP_848362.1\| purine operon repressor [Listeria welshimeri serovar 6b str. SLCC5334]... gi\|254901023, gi... - gi\|254901023\|ref\|ZP_05260947.1\| pur operon repressor [Listeria monocytogenes J0161], gi\|153186186\|re... gi\|153198201, gi... - gi\|254832488\|ref\|ZP_05237143.1\| pur operon repressor [Listeria monocytogenes 10403S], gi\|153198201\|r... gi\|254913909, gi... - gi\|254913909\|ref\|ZP_05263921.1\| pur operon repressor [Listeria monocytogenes J2818], gi\|153189359\|re... gi\|153165156, gi... - gi\|254871774\|ref\|ZP_05244484.1\| pur operon repressor [Listeria monocytogenes FSL N1-017], gi\|1531651... gi\|225875283, gi... - gi\|226222821\|ref\|YP_002756928.1\| PurR, transcription repressor of purine operon of B. subtilis [List... gi\|254829283, gi... - gi\|254829283\|ref\|ZP_05233970.1\| pur operon repressor [Listeria monocytogenes FSL N3-165], gi\|1531728... gi\|254825895 - gi\|254825895\|ref\|ZP_05230896.1\| pur operon repressor [Listeria monocytogenes FSL J1-194] gi\|133733923, gi... - gi\|254938300\|ref\|ZP_05269997.1\| pur operon repressor [Listeria monocytogenes F6900], gi\|153177848\|re... gi\|254879109 - gi\|254879109\|ref\|ZP_05251819.1\| pur operon repressor [Listeria monocytogenes FSL J2-071] gi\|153200628, gi... - gi\|254933031\|ref\|ZP_05266390.1\| pur operon repressor [Listeria monocytogenes HPB2262], gi\|153200628\|... gi\|254992656 - gi\|254992656\|ref\|ZP_05274846.1\| pur operon repressor [Listeria monocytogenes FSL J2-064] gi\|255029034 - gi\|255029034\|ref\|ZP_05300985.1\| pur operon repressor [Listeria monocytogenes LO28] gi\|255519701 - gi\|255519701\|ref\|ZP_05386938.1\| pur operon repressor [Listeria monocytogenes FSL J1-175]	222.0	[0..1]	[270..1]
gi\|293572666\|ref... - pur operon repressor [Enterococcus faecium E980] gi\|48825658 - ref\|ZP_00286899.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-binding prot... gi\|227552700, gi... - gi\|227552700\|ref\|ZP_03982749.1\| purine operon repressor [Enterococcus faecium TX1330], gi\|227178163\|... gi\|69245414, gi\|... - gi\|69245414\|ref\|ZP_00603409.1\| Pur operon repressor [Enterococcus faecium DO], gi\|68195796\|gb\|EAN102...	218.0	[0..1]	[272..1]
gi\|42735040, gi\|... - gi\|42779125\|ref\|NP_976372.1\| purine operon repressor [Bacillus cereus ATCC 10987], gi\|42735040\|gb\|AA...	218.0	[0..1]	[269..1]
gi\|152022646, gi... - gi\|89202234\|ref\|ZP_01180962.1\| Pur operon repressor [Bacillus cereus subsp. cytotoxis NVH 391-98], g...	218.0	[0..1]	[269..1]
gi\|228937349, gi... - gi\|228937349\|ref\|ZP_04099996.1\| Pur operon repressor [Bacillus thuringiensis serovar berliner ATCC 1... gi\|228898800, gi... - gi\|228898800\|ref\|ZP_04063083.1\| Pur operon repressor [Bacillus thuringiensis IBL 4222], gi\|228860825... gi\|228976805, gi... - gi\|228976805\|ref\|ZP_04137218.1\| Pur operon repressor [Bacillus thuringiensis Bt407], gi\|228782901\|gb... gi\|74492899, gi\|... - gi\|75759608\|ref\|ZP_00739694.1\| Pur operon repressor [Bacillus thuringiensis serovar israelensis ATCC... gi\|228970235, gi... - gi\|228970235\|ref\|ZP_04130895.1\| Pur operon repressor [Bacillus thuringiensis serovar thuringiensis s... gi\|218544270, gi... - gi\|218895182\|ref\|YP_002443593.1\| pur operon repressor [Bacillus cereus G9842], gi\|218544270\|gb\|ACK96...	218.0	[0..1]	[269..1]

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Predicted Domain #1

Region A:
Residues: [1-291]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFRRSGRLV DLTNYLLTHP HELIPLTFFS ERYESAKSSI SEDLTIIKQT FEQQGIGTLL  60
   61 TVPGAAGGVK YIPKMKQAEA EEFVQTLGQS LANPERILPG GYVYLTDILG KPSVLSKVGK 120
  121 LFASVFAERE IDVVMTVATK GIPLAYAAAS YLNVPVVIVR KDNKVTEGST VSINYVSGSS 180
  181 NRIQTMSLAK RSMKTGSNVL IIDDFMKAGG TINGMINLLD EFNANVAGIG VLVEAEGVDE 240
  241 RLVDEYMSLL TLSTINMKEK SIEIQNGNFL RFFKDNLLKN GETESHHHHH H

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.39794
Match:	1p4aA
Description:	Crystal Structure of the PurR complexed with cPRPP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits