YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|34810157, gi\|...
Organism:	Escherichia coli
Length:	112 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34810157, gi|....

Description	E-value	Query Range	Subject Range
gi\|77973618, gi\|... - gi\|77973618\|ref\|ZP_00829164.1\| COG3050: DNA polymerase III, psi subunit [Yersinia frederiksenii ATCC...	170.0	[0..1]	[109..26]
gi\|77959695 - gi\|77959695\|ref\|ZP_00823712.1\| COG3050: DNA polymerase III, psi subunit [Yersinia bercovieri ATCC 43...	167.0	[0..1]	[109..26]
gi\|152960063, gi... - gi\|77631559\|ref\|ZP_00794145.1\| COG3050: DNA polymerase III, psi subunit [Yersinia pseudotuberculosis... gi\|51588206, gi\|... - gi\|51594924\|ref\|YP_069115.1\| DNA polymerase III subunit psi [Yersinia pseudotuberculosis IP 32953], ... gi\|170025850, gi... - gi\|170025850\|ref\|YP_001722355.1\| DNA polymerase III subunit psi [Yersinia pseudotuberculosis YPIII],... Q66EW8\|Q66EW8_YERPS - DNA polymerase III, psi subunit - Yersinia pseudotuberculosis gi\|186893924, gi... - gi\|186893924\|ref\|YP_001871036.1\| DNA polymerase III subunit psi [Yersinia pseudotuberculosis PB1/+],...	164.0	[0..1]	[109..26]
gi\|167426032, gi... - gi\|167426032\|ref\|ZP_02317785.1\| DNA polymerase III, psi subunit [Yersinia pestis biovar Mediaevalis ... gi\|167469142 - gi\|167469142\|ref\|ZP_02333846.1\| DNA polymerase III, psi subunit [Yersinia pestis FV-1] gi\|165936374, gi... - gi\|89104390\|ref\|ZP_01176934.1\| COG3050: DNA polymerase III, psi subunit [Yersinia pestis biovar Orie... gi\|165927299, gi... - gi\|165927299\|ref\|ZP_02223131.1\| DNA polymerase III, psi subunit [Yersinia pestis biovar Orientalis s... gi\|77635633, gi\|... - gi\|77635633\|ref\|ZP_00797715.1\| COG3050: DNA polymerase III, psi subunit [Yersinia pestis Angola], gi... gi\|108809847, gi... - gi\|108809847\|ref\|YP_653763.1\| DNA polymerase III subunit psi [Yersinia pestis Antiqua], gi\|108781760... gi\|166009042, gi... - gi\|166009042\|ref\|ZP_02229940.1\| DNA polymerase III, psi subunit [Yersinia pestis biovar Antiqua str.... gi\|229681991, gi... - gi\|229900652\|ref\|ZP_04515776.1\| DNA polymerase III, psi subunit [Yersinia pestis Nepal516], gi\|22968... gi\|166212111, gi... - gi\|166212111\|ref\|ZP_02238146.1\| DNA polymerase III, psi subunit [Yersinia pestis biovar Antiqua str.... gi\|167400689, gi... - gi\|167400689\|ref\|ZP_02306198.1\| DNA polymerase III, psi subunit [Yersinia pestis biovar Antiqua str.... gi\|167418940, gi... - gi\|167418940\|ref\|ZP_02310693.1\| DNA polymerase III, psi subunit [Yersinia pestis biovar Orientalis s... gi\|150260532, gi... - gi\|150260532\|ref\|ZP_01917260.1\| DNA polymerase III, psi subunit [Yersinia pestis CA88-4125], gi\|1492... gi\|21960734, gi\|... - gi\|22127623\|ref\|NP_671046.1\| DNA polymerase III subunit psi [Yersinia pestis KIM], gi\|21960734\|gb\|AA... gi\|229705934, gi... - gi\|229836991\|ref\|ZP_04457156.1\| DNA polymerase III, psi subunit [Yersinia pestis Pestoides A], gi\|22... gi\|25288607 - pir\|\|AC0053 DNA-directed DNA polymerase (EC 2.7.7.7) psi chain [imported] - Yersinia pestis (strain ... gi\|229696677, gi... - gi\|229840311\|ref\|ZP_04460470.1\| DNA polymerase III, psi subunit [Yersinia pestis biovar Orientalis s... gi\|218927629, gi... - gi\|218927629\|ref\|YP_002345504.1\| DNA polymerase III subunit psi [Yersinia pestis CO92], gi\|16120761\|... gi\|229842390, gi... - gi\|229842390\|ref\|ZP_04462545.1\| DNA polymerase III, psi subunit [Yersinia pestis biovar Orientalis s... gi\|45438354, gi\|... - gi\|45443485\|ref\|NP_995024.1\| DNA polymerase III subunit psi [Yersinia pestis biovar Microtus str. 91...	164.0	[0..1]	[109..26]
gi\|77960335 - gi\|77960335\|ref\|ZP_00824212.1\| COG3050: DNA polymerase III, psi subunit [Yersinia mollaretii ATCC 43...	163.0	[0..1]	[109..26]
gi\|75198186, gi\|... - gi\|75198186\|ref\|ZP_00708256.1\| COG3050: DNA polymerase III, psi subunit [Escherichia coli HS], gi\|15... gi\|157157679, gi... - gi\|75189080\|ref\|ZP_00702347.1\| COG3050: DNA polymerase III, psi subunit [Escherichia coli E24377A], ... gi\|209915096, gi... - gi\|209921837\|ref\|YP_002295921.1\| DNA polymerase III subunit psi [Escherichia coli SE11], gi\|20991509...	163.0	[0..1]	[112..26]
HOLD_ECOLI - DNA polymerase III subunit psi (EC 2.7.7.7) - Escherichia coli gi\|254164297, gi... - gi\|254164297\|ref\|YP_003047407.1\| DNA polymerase III subunit psi [Escherichia coli B str. REL606], gi... gi\|253774999, gi... - gi\|254291048\|ref\|YP_003056798.1\| DNA polymerase III subunit psi [Escherichia coli BL21(DE3)], gi\|253... gi\|89111079, gi\|... - gi\|89111079\|ref\|AP_004859.1\| DNA polymerase III, psi subunit [Escherichia coli str. K-12 substr. W31... EG11414 - DNA polymerase III, psi subunit / DNA polymerase, psi subunit, clamp loader complex subunit EG11414 - DNA polymerase III, psi subunit / DNA polymerase, psi subunit, clamp loader complex subunit gi\|218561547, gi... - gi\|218561547\|ref\|YP_002394460.1\| DNA polymerase III subunit psi [Escherichia coli S88], gi\|218368316... gi\|169891592, gi... - gi\|170083757\|ref\|YP_001733077.1\| DNA polymerase III, psi subunit [Escherichia coli str. K-12 substr.... gi\|238903458, gi... - gi\|238903458\|ref\|YP_002929254.1\| DNA polymerase III, psi subunit [Escherichia coli BW2952], gi\|23886...	162.0	[0..1]	[112..26]
gi\|13364808, gi\|... - gi\|15834584\|ref\|NP_313357.1\| DNA polymerase III subunit psi [Escherichia coli O157:H7], gi\|13364808\|... gi\|209748980, gi... - pir\|\|D86136 DNA polymerase III, psi subunit [imported] - Escherichia coli (strain O157:H7, substrain... gi\|124530340, gi... - gi\|124530340\|ref\|ZP_01701026.1\| DNA polymerase III, psi subunit [Escherichia coli B], gi\|124499231\|g... gi\|15804943, gi\|... - gi\|15804943\|ref\|NP_290985.1\| DNA polymerase III subunit psi [Escherichia coli O157:H7 EDL933], gi\|12... gi\|217321898, gi... - gi\|217325677\|ref\|ZP_03441761.1\| DNA polymerase III, psi subunit [Escherichia coli O157:H7 str. TW145... gi\|215267755, gi... - gi\|215489683\|ref\|YP_002332114.1\| DNA polymerase III subunit psi [Escherichia coli O127:H6 str. E2348... gi\|218698208, gi... - gi\|218698208\|ref\|YP_002405875.1\| DNA polymerase III subunit psi [Escherichia coli 55989], gi\|2183549... gi\|218551621, gi... - gi\|218551621\|ref\|YP_002385413.1\| DNA polymerase III subunit psi [Escherichia fergusonii ATCC 35469],... gi\|218708049, gi... - gi\|218708049\|ref\|YP_002415568.1\| DNA polymerase III subunit psi [Escherichia coli UMN026], gi\|218435... gi\|75234534, gi\|... - gi\|75234534\|ref\|ZP_00718875.1\| COG3050: DNA polymerase III, psi subunit [Escherichia coli E110019], ... gi\|193065635, gi... - gi\|75256283\|ref\|ZP_00727955.1\| COG3050: DNA polymerase III, psi subunit [Escherichia coli E22], gi\|1... gi\|83585279, gi\|... - gi\|83585279\|ref\|ZP_00923927.1\| COG3050: DNA polymerase III, psi subunit [Escherichia coli 101-1], gi... gi\|187733780, gi... - gi\|75176028\|ref\|ZP_00696207.1\| COG3050: DNA polymerase III, psi subunit [Shigella boydii BS512], gi\|... gi\|81243770, gi\|... - gi\|82779622\|ref\|YP_405971.1\| DNA polymerase III subunit psi [Shigella dysenteriae Sd197], gi\|8124377... gi\|81248133, gi\|... - gi\|82546722\|ref\|YP_410669.1\| DNA polymerase III subunit psi [Shigella boydii Sb227], gi\|81248133\|gb\|... gi\|75515562, gi\|... - gi\|75515562\|ref\|ZP_00737719.1\| COG3050: DNA polymerase III, psi subunit [Escherichia coli 53638], gi... gi\|74314806, gi\|... - gi\|74314806\|ref\|YP_313225.1\| DNA polymerase III subunit psi [Shigella sonnei Ss046], gi\|73858283\|gb\|... gi\|237704108, gi... - gi\|237704108\|ref\|ZP_04534589.1\| DNA polymerase III subunit psi [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|254796367, gi... - gi\|254796367\|ref\|YP_003081204.1\| DNA polymerase III, psi subunit [Escherichia coli O157:H7 str. TW14... gi\|13364808, gi\|... - gi\|15834584\|ref\|NP_313357.1\| DNA polymerase III subunit psi [Escherichia coli O157:H7 str. Sakai], g... gi\|168797942, gi... - gi\|189379507\|gb\|EDU97923.1\| DNA polymerase III, psi subunit [Escherichia coli O157:H7 str. EC508], g... gi\|168785013, gi... - gi\|189374741\|gb\|EDU93157.1\| DNA polymerase III, psi subunit [Escherichia coli O157:H7 str. EC869], g... gi\|195937643 - gi\|195937643\|ref\|ZP_03083025.1\| DNA polymerase III subunit psi [Escherichia coli O157:H7 str. EC4024... gi\|169756597, gi... - gi\|170021669\|ref\|YP_001726623.1\| DNA polymerase III subunit psi [Escherichia coli ATCC 8739], gi\|169... gi\|208812939, gi... - gi\|208812939\|ref\|ZP_03254268.1\| DNA polymerase III, psi subunit [Escherichia coli O157:H7 str. EC404... gi\|208806435, gi... - gi\|208806435\|ref\|ZP_03248772.1\| DNA polymerase III, psi subunit [Escherichia coli O157:H7 str. EC420... gi\|209397348, gi... - gi\|209397348\|ref\|YP_002273892.1\| DNA polymerase III, psi subunit [Escherichia coli O157:H7 str. EC41... gi\|208820562, gi... - gi\|208820562\|ref\|ZP_03260882.1\| DNA polymerase III, psi subunit [Escherichia coli O157:H7 str. EC404... gi\|168750993, gi... - gi\|188014948\|gb\|EDU53070.1\| DNA polymerase III, psi subunit [Escherichia coli O157:H7 str. EC4113], ... gi\|189364207, gi... - gi\|189364207\|gb\|EDU82626.1\| DNA polymerase III, psi subunit [Escherichia coli O157:H7 str. EC4486], ... gi\|189356067, gi... - gi\|189356067\|gb\|EDU74486.1\| DNA polymerase III, psi subunit [Escherichia coli O157:H7 str. EC4401], ... gi\|189000750, gi... - gi\|189000750\|gb\|EDU69736.1\| DNA polymerase III, psi subunit [Escherichia coli O157:H7 str. EC4076], ... gi\|168776652, gi... - gi\|187768018\|gb\|EDU31862.1\| DNA polymerase III, psi subunit [Escherichia coli O157:H7 str. EC4196], ...	162.0	[0..1]	[112..26]
gi\|75229431, gi\|... - gi\|75229431\|ref\|ZP_00715981.1\| COG3050: DNA polymerase III, psi subunit [Escherichia coli B7A], gi\|1...	162.0	[0..1]	[112..26]
gi\|110346400, gi... - gi\|110644808\|ref\|YP_672538.1\| DNA polymerase III subunit psi [Escherichia coli 536], gi\|110346400\|gb... gi\|218692759, gi... - gi\|218692759\|ref\|YP_002400971.1\| DNA polymerase III subunit psi [Escherichia coli ED1a], gi\|21843032... gi\|218703064, gi... - gi\|218703064\|ref\|YP_002410693.1\| DNA polymerase III subunit psi [Escherichia coli IAI39], gi\|2183730... gi\|91214026, gi\|... - gi\|91214026\|ref\|YP_544012.1\| DNA polymerase III subunit psi [Escherichia coli UTI89], gi\|91075600\|gb... gi\|190905178, gi... - gi\|75236062\|ref\|ZP_00720188.1\| COG3050: DNA polymerase III, psi subunit [Escherichia coli F11], gi\|1... gi\|26111691, gi\|... - gi\|26251258\|ref\|NP_757298.1\| DNA polymerase III subunit psi [Escherichia coli CFT073], gi\|26111691\|g... gi\|227885142, gi... - gi\|227885142\|ref\|ZP_04002947.1\| DNA polymerase III subunit psi [Escherichia coli 83972], gi\|22783797...	162.0	[0..1]	[112..26]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QGEIAIAIPA HVRLVMVAND LPALTDPLVS DVLRALTVSP DQVLQLTPEK IAMLPQGSHC  60
   61 NSWRLGTDEP LSLEGAQVAS PALTDLRANP TARAALWQQI CTYEHDFFPR ND

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.39794
Match:	1em8B
Description:	Crystal structure of chi and psi subunit heterodimer from DNA POL III
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits