YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|34810647
Organism:	Escherichia coli
Length:	280 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|34810647.

Description	E-value	Query Range	Subject Range
gi\|113475509, gi... - gi\|71674567\|ref\|ZP_00672314.1\| Armadillo:HEAT:Caspase-1, p20:PBS lyase HEAT-like repeat [Trichodesmi...	244.0	[0..2]	[279..707]
gi\|72396494, gi\|... - gi\|73669332\|ref\|YP_305347.1\| hypothetical protein Mbar_A1826 [Methanosarcina barkeri str. Fusaro], g...	238.0	[0..3]	[278..722]
gi\|75703439, gi\|... - gi\|75909714\|ref\|YP_324010.1\| signal transduction protein [Anabaena variabilis ATCC 29413], gi\|757034...	216.0	[0..2]	[278..814]
gi\|17229395, gi\|... - gi\|17229395\|ref\|NP_485943.1\| hypothetical protein alr1903 [Nostoc sp. PCC 7120], gi\|17130993\|dbj\|BAB... gi\|25535206 - pir\|\|AI2043 hypothetical protein alr1903 [imported] - Nostoc sp. (strain PCC 7120)	216.0	[0..3]	[279..695]
gi\|19918441, gi\|... - gi\|20093106\|ref\|NP_619181.1\| phycocyanin alpha phycocyanobilin lyase related protein [Methanosarcina...	186.0	[0..4]	[278..198]
gi\|53686724 - gi\|53686724\|ref\|ZP_00105992.2\| COG1413: FOG: HEAT repeat [Nostoc punctiforme PCC 73102]	182.0	[0..4]	[277..471]

Back

Predicted Domain #1

Region A:
Residues: [1-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 XSNTYQKRKA SKEYGLYNQC KKLNDDELFR LLDDHNSLKR ISSARVLQLR GGQDAVRLAI  60
   61 EFCSDKNYIR RDIGAFILGQ IKICKKCEDN VFNILNNXAL NDKSACVRAT AIESTAQRCK 120
  121 KNPIYSPKIV EQSQITAFDK STNVRRATAF AISVINDKAT IPLLINLLKD PNGDVRNWAA 180
  181 FAININKYDN SDIRDCFVEX LQDKNEEVRI EAIIGLSYRK DKRVLSVLCD ELKKNTVYDD 240
  241 IIEAAGELGD KTLLPVLDTX LYKFDDNEII TSAIDKLKRS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.0
Match:	1oyzA
Description:	X-RAY STRUCTURE OF YIBA_ECOLI NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ET31.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits