YRC Public Data Repository - Protein Structure Prediction

Protein:	PYRR_OCEIH
Organism:	Oceanobacillus iheyensis
Length:	180 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PYRR_OCEIH.

Description	E-value	Query Range	Subject Range
gi\|228748330, gi... - gi\|229013076\|ref\|ZP_04170241.1\| Pyrimidine regulatory protein PyrR [Bacillus mycoides DSM 2048], gi\|... PYRR_BACWK - Bifunctional protein PyrR OS=Bacillus weihenstephanensis (strain KBAB4) GN=pyrR PE=3 SV=1 gi\|228648747, gi... - gi\|229134701\|ref\|ZP_04263510.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus BDRD-ST196], gi\|... gi\|228717731, gi... - gi\|229061497\|ref\|ZP_04198841.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus AH603], gi\|22871... gi\|228614788, gi... - gi\|229168632\|ref\|ZP_04296354.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus AH621], gi\|22861... gi\|228620709, gi... - gi\|229162827\|ref\|ZP_04290784.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus R309803], gi\|228...	149.0	[0..1]	[180..1]
PYRR_BACAH - Bifunctional protein PyrR OS=Bacillus thuringiensis (strain Al Hakam) GN=pyrR PE=3 SV=1 gi\|74488149, gi\|... - gi\|75764364\|ref\|ZP_00743884.1\| Uracil phosphoribosyltransferase / Pyrimidine operon regulatory prot... PYRR_BACCR - Bifunctional protein PyrR OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / N... PYRR_BACC4 - Bifunctional protein PyrR OS=Bacillus cereus (strain B4264) GN=pyrR PE=3 SV=1 gi\|30263894, gi\|... - gi\|30263894\|ref\|NP_846271.1\| pyrimidine regulatory protein PyrR [Bacillus anthracis str. Ames], gi\|3... PYRR_BACC7 - Bifunctional protein PyrR OS=Bacillus cereus (strain AH187) GN=pyrR PE=3 SV=1 PYRR_BACCQ - Bifunctional protein PyrR OS=Bacillus cereus (strain Q1) GN=pyrR PE=3 SV=1 gi\|65321219, gi\|... - gi\|65321219\|ref\|ZP_00394178.1\| COG2065: Pyrimidine operon attenuation protein/uracil phosphoribosylt... PYRR_BACC2 - Bifunctional protein PyrR OS=Bacillus cereus (strain G9842) GN=pyrR PE=3 SV=1 gi\|167636448, gi... - gi\|167636448\|ref\|ZP_02394747.1\| pyrimidine operon regulatory protein [Bacillus anthracis str. A0442]... gi\|165872317, gi... - gi\|165872317\|ref\|ZP_02216954.1\| pyrimidine operon regulatory protein [Bacillus anthracis str. A0488]... gi\|170688857, gi... - gi\|170688857\|ref\|ZP_02880060.1\| pyrimidine operon regulatory protein [Bacillus anthracis str. A0465]... gi\|167641122, gi... - gi\|167641122\|ref\|ZP_02399377.1\| pyrimidine operon regulatory protein [Bacillus anthracis str. A0193]... PYRR_BACCZ - Bifunctional protein PyrR OS=Bacillus cereus (strain ZK / E33L) GN=pyrR PE=3 SV=1 gi\|177654892, gi... - gi\|177654892\|ref\|ZP_02936609.1\| pyrimidine operon regulatory protein [Bacillus anthracis str. A0174]... gi\|170126289, gi... - gi\|170708804\|ref\|ZP_02899240.1\| pyrimidine operon regulatory protein [Bacillus anthracis str. A0389]... gi\|47504471, gi\|... - gi\|47529323\|ref\|YP_020672.1\| pyrimidine regulatory protein PyrR [Bacillus anthracis str. 'Ames Ances... gi\|206745086, gi... - gi\|206976776\|ref\|ZP_03237680.1\| pyrimidine operon regulatory protein [Bacillus cereus H3081.97], gi\|... gi\|49186741, gi\|... - gi\|49186741\|ref\|YP_029993.1\| pyrimidine regulatory protein PyrR [Bacillus anthracis str. Sterne], gi... gi\|196038664, gi... - gi\|196038664\|ref\|ZP_03105972.1\| pyrimidine operon regulatory protein [Bacillus cereus NVH0597-99], g... gi\|228772630, gi... - gi\|228987036\|ref\|ZP_04147161.1\| Pyrimidine regulatory protein PyrR [Bacillus thuringiensis serovar t... gi\|228711682, gi... - gi\|229071391\|ref\|ZP_04204613.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus F65185], gi\|2287... gi\|228707425, gi... - gi\|229075649\|ref\|ZP_04208631.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus Rock4-18], gi\|22... gi\|228702188, gi... - gi\|229081144\|ref\|ZP_04213654.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus Rock4-2], gi\|228... gi\|229092937, gi... - gi\|229092937\|ref\|ZP_04224070.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus Rock3-42], gi\|22... gi\|229098362, gi... - gi\|229098362\|ref\|ZP_04229308.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus Rock3-29], gi\|22... gi\|229104454, gi... - gi\|229104454\|ref\|ZP_04235122.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus Rock3-28], gi\|22... gi\|229111361, gi... - gi\|229111361\|ref\|ZP_04240914.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus Rock1-15], gi\|22... gi\|228666087, gi... - gi\|229117387\|ref\|ZP_04246764.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus Rock1-3], gi\|228... gi\|229129169, gi... - gi\|229129169\|ref\|ZP_04258142.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus BDRD-Cer4], gi\|2... gi\|228643101, gi... - gi\|229140540\|ref\|ZP_04269095.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus BDRD-ST26], gi\|2... gi\|229146463, gi... - gi\|229146463\|ref\|ZP_04274834.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus BDRD-ST24], gi\|2... gi\|229152089, gi... - gi\|229152089\|ref\|ZP_04280284.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus m1550], gi\|22863... gi\|228625920, gi... - gi\|229157470\|ref\|ZP_04285547.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus ATCC 4342], gi\|2... gi\|229186132, gi... - gi\|229186132\|ref\|ZP_04313301.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus BGSC 6E1], gi\|22... gi\|228591387, gi... - gi\|229192061\|ref\|ZP_04319030.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus ATCC 10876], gi\|... PYRR_BACAA - Bifunctional protein PyrR OS=Bacillus anthracis (strain A0248) GN=pyrR PE=3 SV=1 gi\|254683399 - gi\|254683399\|ref\|ZP_05147259.1\| bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosy... gi\|254721424 - gi\|254721424\|ref\|ZP_05183213.1\| bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosy... gi\|254735931 - gi\|254735931\|ref\|ZP_05193637.1\| bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosy... gi\|254739821 - gi\|254739821\|ref\|ZP_05197514.1\| bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosy... gi\|254751011 - gi\|254751011\|ref\|ZP_05203050.1\| bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosy... gi\|254756823 - gi\|254756823\|ref\|ZP_05208851.1\| bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosy... PYRR_BACAN - Bifunctional protein PyrR OS=Bacillus anthracis GN=pyrR PE=3 SV=1 PYRR_BACC3 - Bifunctional protein PyrR OS=Bacillus cereus (strain 03BB102) GN=pyrR PE=3 SV=1 PYRR_BACAC - Bifunctional protein PyrR OS=Bacillus anthracis (strain CDC 684 / NRRL 3495) GN=pyrR PE=3 SV=1 gi\|228857253, gi... - gi\|228902396\|ref\|ZP_04066551.1\| Pyrimidine regulatory protein PyrR [Bacillus thuringiensis IBL 4222]... gi\|228909718, gi... - gi\|228909718\|ref\|ZP_04073541.1\| Pyrimidine regulatory protein PyrR [Bacillus thuringiensis IBL 200],... gi\|228916529, gi... - gi\|228916529\|ref\|ZP_04080095.1\| Pyrimidine regulatory protein PyrR [Bacillus thuringiensis serovar p... gi\|228922644, gi... - gi\|228922644\|ref\|ZP_04085944.1\| Pyrimidine regulatory protein PyrR [Bacillus thuringiensis serovar h... gi\|228818659, gi... - gi\|228940980\|ref\|ZP_04103538.1\| Pyrimidine regulatory protein PyrR [Bacillus thuringiensis serovar b... gi\|228805488, gi... - gi\|228954168\|ref\|ZP_04116196.1\| Pyrimidine regulatory protein PyrR [Bacillus thuringiensis serovar k... gi\|228792943, gi... - gi\|228966844\|ref\|ZP_04127888.1\| Pyrimidine regulatory protein PyrR [Bacillus thuringiensis serovar s... gi\|228973911, gi... - gi\|228973911\|ref\|ZP_04134486.1\| Pyrimidine regulatory protein PyrR [Bacillus thuringiensis serovar t... gi\|228980500, gi... - gi\|228980500\|ref\|ZP_04140810.1\| Pyrimidine regulatory protein PyrR [Bacillus thuringiensis Bt407], g...	148.0	[0..1]	[180..1]
PYRR_BACHK - Bifunctional protein PyrR OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=pyrR PE=3 SV=... PYRR_BACC0 - Bifunctional protein PyrR OS=Bacillus cereus (strain AH820) GN=pyrR PE=3 SV=1 gi\|196035847, gi... - gi\|196035847\|ref\|ZP_03103249.1\| pyrimidine operon regulatory protein [Bacillus cereus W], gi\|1959914... gi\|228992626, gi... - gi\|228992626\|ref\|ZP_04152552.1\| Pyrimidine regulatory protein PyrR [Bacillus pseudomycoides DSM 1244... gi\|228947611, gi... - gi\|228947611\|ref\|ZP_04109901.1\| Pyrimidine regulatory protein PyrR [Bacillus thuringiensis serovar m... gi\|228824372, gi... - gi\|228935207\|ref\|ZP_04098033.1\| Pyrimidine regulatory protein PyrR [Bacillus thuringiensis serovar a... gi\|228830747, gi... - gi\|228928940\|ref\|ZP_04091972.1\| Pyrimidine regulatory protein PyrR [Bacillus thuringiensis serovar p... PYRR_BACHK - Bifunctional protein pyrR OS=Bacillus thuringiensis subsp. konkukian GN=pyrR PE=3 SV=1 gi\|229198003, gi... - gi\|229198003\|ref\|ZP_04324717.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus m1293], gi\|22858... gi\|228660181, gi... - gi\|229123405\|ref\|ZP_04252609.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus 95/8201], gi\|228... gi\|228755015, gi... - gi\|229006174\|ref\|ZP_04163860.1\| Pyrimidine regulatory protein PyrR [Bacillus mycoides Rock1-4], gi\|2... gi\|228761140, gi... - gi\|228998672\|ref\|ZP_04158259.1\| Pyrimidine regulatory protein PyrR [Bacillus mycoides Rock3-17], gi\|...	148.0	[0..1]	[180..1]
gi\|47570306, gi\|... - gi\|47570306\|ref\|ZP_00240953.1\| pyrimidine operon regulatory protein PyrR [Bacillus cereus G9241], gi... gi\|229025338, gi... - gi\|229025338\|ref\|ZP_04181756.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus AH1272], gi\|2287... gi\|228742194, gi... - gi\|229019094\|ref\|ZP_04175929.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus AH1273], gi\|2287... gi\|229174557, gi... - gi\|229174557\|ref\|ZP_04302088.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus MM3], gi\|2286089... gi\|229031523, gi... - gi\|229031523\|ref\|ZP_04187523.1\| Pyrimidine regulatory protein PyrR [Bacillus cereus AH1271], gi\|2287...	147.0	[0..1]	[180..1]
PYRR_BACCN - Bifunctional protein PyrR OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-...	146.0	[0..1]	[180..1]
PYRR_BACC1 - Bifunctional protein PyrR OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=pyrR PE=3 SV=1	146.0	[0..1]	[180..1]
PYRR_BACHD - Bifunctional protein PyrR OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM ... PYRR_BACHD - Bifunctional protein pyrR OS=Bacillus halodurans GN=pyrR PE=3 SV=1	141.0	[0..5]	[180..3]
gi\|239631457, gi... - gi\|239631457\|ref\|ZP_04674488.1\| pyrimidine operon attenuation protein/uracil phosphoribosyltransfera... gi\|191638453, gi... - gi\|191638453\|ref\|YP_001987619.1\| bifunctional pyrimidine regulatory protein PyrR uracil phosphoribos... gi\|116494943, gi... - gi\|62514619\|ref\|ZP_00386118.1\| COG2065: Pyrimidine operon attenuation protein/uracil phosphoribosylt...	140.0	[0..1]	[179..1]
gi\|52003360, gi\|... - gi\|52785526\|ref\|YP_091355.1\| pyrimidine regulatory protein PyrR [Bacillus licheniformis ATCC 14580],...	139.0	[0..2]	[180..4]
PYRR_BACSU - Bifunctional protein pyrR OS=Bacillus subtilis GN=pyrR PE=1 SV=2 gi\|221322943 - gi\|221322943\|ref\|ZP_03604237.1\| bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosy... PYRR_BACSU - Bifunctional protein PyrR OS=Bacillus subtilis (strain 168) GN=pyrR PE=1 SV=2 gi\|221318670 - gi\|221318670\|ref\|ZP_03599964.1\| bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosy... gi\|221313746 - gi\|221313746\|ref\|ZP_03595551.1\| bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosy...	138.0	[0..1]	[179..1]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKTEILDA ASIQRALTRM SHEILEKNKG GENLVLIGIK TRGVPLAKRI QQKIKQIESI  60
   61 EVPLGELDIT MYRDDLDKVS EQEDPKINSV SIGMDITDKH VILIDDVLFT GRTVRAAMDA 120
  121 VMDVGRPSTI QLGSLVDRGH RELPIRADYV GKNIPTSDRE IVVVQLSEQD QEDRVSLYEK 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.0
Match:	1a3cA
Description:	PYRR, THE BACILLUS SUBTILIS PYRIMIDINE BIOSYNTHETIC OPERON REPRESSOR, DIMERIC FORM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring glycosyl groups	4.2311942024575	bayes_pls_golite062009
uracil phosphoribosyltransferase activity	4.16478627082997	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	3.03016109611914	bayes_pls_golite062009
hypoxanthine phosphoribosyltransferase activity	2.87924736622135	bayes_pls_golite062009
catalytic activity	2.67475805095976	bayes_pls_golite062009
adenine phosphoribosyltransferase activity	2.55041201441853	bayes_pls_golite062009
transferase activity	2.23444207913717	bayes_pls_golite062009
orotate phosphoribosyltransferase activity	1.74456227958952	bayes_pls_golite062009
ribose phosphate diphosphokinase activity	1.7212298503296	bayes_pls_golite062009
diphosphotransferase activity	1.16607700772697	bayes_pls_golite062009
amidophosphoribosyltransferase activity	1.14461122399598	bayes_pls_golite062009
transcription regulator activity	0.638819926590526	bayes_pls_golite062009
nucleic acid binding	0.365716008829981	bayes_pls_golite062009
DNA binding	0.197909920189603	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: