YRC Public Data Repository - Protein Structure Prediction

Protein:	EMC4_PONAB
Organism:	Pongo abelii
Length:	183 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for EMC4_PONAB.

Description	E-value	Query Range	Subject Range
gi\|57108075 - gi\|57108075\|ref\|XP_535416.1\| PREDICTED: similar to CG11137-PA [Canis familiaris]	3.0E-86	[1..183]	[1..183]
EMC4_MOUSE - ER membrane protein complex subunit 4 OS=Mus musculus GN=Emc4 PE=1 SV=1 tr\|G3HIG8\|G3HIG8... - Transmembrane protein 85 OS=Cricetulus griseus GN=I79_010437 PE=4 SV=1 gi\|157817408, gi... - gi\|157817408\|ref\|NP_001099965.1\| transmembrane protein 85 [Rattus norvegicus], gi\|149022905\|gb\|EDL79...	6.0E-83	[1..183]	[1..183]
gi\|38570363 - gi\|38570363\|gb\|AAR24622.1\| proliferation-inducing gene 17 [Homo sapiens]	5.0E-82	[1..183]	[1..183]
EMC4_BOVIN - ER membrane protein complex subunit 4 OS=Bos taurus GN=EMC4 PE=2 SV=1 gi\|149692100 - gi\|149692100\|ref\|XP_001503724.1\| PREDICTED: similar to Transmembrane protein 85 (Cell proliferation-... gi\|194039184, gi... - gi\|194039200\|ref\|XP_001927127.1\| PREDICTED: similar to Transmembrane protein 85 (Cell proliferation-...	1.0E-81	[1..183]	[1..183]
gi\|109468547 - gi\|109468547\|ref\|XP_215797.4\| PREDICTED: similar to CG11137-PA [Rattus norvegicus]	3.0E-81	[1..183]	[1..183]
gi\|114656164 - gi\|114656164\|ref\|XP_510280.2\| PREDICTED: similar to TMEM85 protein isoform 3 [Pan troglodytes]	5.0E-79	[1..183]	[1..184]
EMC4_XENTR - ER membrane protein complex subunit 4 OS=Xenopus tropicalis GN=emc4 PE=2 SV=1	1.0E-76	[1..183]	[1..180]
EMC4_XENLA - ER membrane protein complex subunit 4 OS=Xenopus laevis GN=emc4 PE=2 SV=1	4.0E-76	[1..183]	[1..180]

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Predicted Domain #1

Region A:
Residues: [1-183]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAQGGLVAN RGRRFKWAIE LSGPGGGSRG RSDRGSGQGD SLYPVGYLDK QVPDTSVQET  60
   61 DRILVEKRCW DIALGPLKQI PMNLFIMYMA GNTISIFPTM MVCMMAWRPI QALMAISATF 120
  121 KMLESSSQKF LQGLVYLIGN LMGLALAVYK CQSMGLLPTH ASDWLAFIEP PERMEFSGGG 180
  181 LLL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	60.060481
Match:	PF06417.3
Description:	No description for PF06417.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits