YRC Public Data Repository - Protein Structure Prediction

Protein:	YFBU_SALPA
Organism:	Salmonella enterica subsp. enterica serovar Paratyphi A
Length:	164 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFBU_SALPA.

Description	E-value	Query Range	Subject Range
YFBU_SALCH - UPF0304 protein yfbU OS=Salmonella choleraesuis GN=yfbU PE=3 SV=1 YFBU_SALCH - UPF0304 protein YfbU OS=Salmonella choleraesuis (strain SC-B67) GN=yfbU PE=3 SV=1 YFBU_SALCH - UPF0304 protein yfbU OS=Salmonella choleraesuis GN=yfbU PE=3 SV=1	2.0E-72	[1..164]	[1..164]
gi\|26109086, gi\|... - gi\|26248681\|ref\|NP_754721.1\| hypothetical protein c2835 [Escherichia coli CFT073], gi\|26109086\|gb\|AA...	5.0E-72	[1..164]	[28..191]
gi\|162139771 - gi\|162139771\|ref\|NP_311205.2\| hypothetical protein ECs3178 [Escherichia coli O157:H7 str. Sakai] gi\|124526459, gi... - gi\|124526459\|ref\|ZP_01698412.1\| YfbU family protein [Escherichia coli B], gi\|124501930\|gb\|EAY49391.1... YFBU_ECOLI - UPF0304 protein yfbU - Escherichia coli YFBU_ECO57 - UPF0304 protein YfbU OS=Escherichia coli O157:H7 GN=yfbU PE=3 SV=2 YFBU_ECOL6 - UPF0304 protein yfbU OS=Escherichia coli O6 GN=yfbU PE=3 SV=1 gi\|194427208, gi... - gi\|75211697\|ref\|ZP_00711776.1\| COG3013: Uncharacterized conserved protein [Escherichia coli B171], g... gi\|190903450, gi... - gi\|75230324\|ref\|ZP_00716814.1\| COG3013: Uncharacterized conserved protein [Escherichia coli B7A], gi... gi\|193068190, gi... - gi\|75238077\|ref\|ZP_00722082.1\| COG3013: Uncharacterized conserved protein [Escherichia coli E110019]... gi\|191170057, gi... - gi\|75243105\|ref\|ZP_00726811.1\| COG3013: Uncharacterized conserved protein [Escherichia coli F11], gi... gi\|193062356, gi... - gi\|75259752\|ref\|ZP_00731054.1\| COG3013: Uncharacterized conserved protein [Escherichia coli E22], gi... gi\|188487569, gi... - gi\|75512766\|ref\|ZP_00735268.1\| COG3013: Uncharacterized conserved protein [Escherichia coli 53638], ... EG14105 - UPF0304 family protein / Cell death gene, function unknown, UPF0304 family gi\|85675349, gi\|... - gi\|89109114\|ref\|AP_002894.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|194424980, gi... - gi\|83588277\|ref\|ZP_00926902.1\| COG3013: Uncharacterized conserved protein [Escherichia coli 101-1], ... YFBU_SHIB3 - UPF0304 protein YfbU OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=yfbU PE=3 SV=1 EG14105 - UPF0304 family protein / Cell death gene, function unknown, UPF0304 family gi\|75196337 - gi\|75196337\|ref\|ZP_00706407.1\| COG3013: Uncharacterized conserved protein [Escherichia coli HS] YFBU_ECOLU - UPF0304 protein YfbU OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=yfbU PE=3 SV=1 YFBU_ECO7I - UPF0304 protein YfbU OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=yfbU PE=3 SV=1 gi\|227887352, gi... - gi\|227887352\|ref\|ZP_04005157.1\| YfbU domain protein [Escherichia coli 83972], gi\|227835702\|gb\|EEJ461... YFBU_ECOBW - UPF0304 protein YfbU OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=yfbU PE=3 SV=1 gi\|242377927, gi... - gi\|251785654\|ref\|YP_002999958.1\| hypothetical protein B21_02179 [Escherichia coli BL21], gi\|24237792... gi\|253978371, gi... - gi\|254289064\|ref\|YP_003054812.1\| hypothetical protein ECD_02219 [Escherichia coli BL21(DE3)], gi\|253... gi\|253974204, gi... - gi\|254162303\|ref\|YP_003045411.1\| hypothetical protein ECB_02219 [Escherichia coli B str. REL606], gi... gi\|254794186, gi... - gi\|254794186\|ref\|YP_003079023.1\| hypothetical protein ECSP_3168 [Escherichia coli O157:H7 str. TW143... YFBU_ECOLC - UPF0304 protein YfbU OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=yfbU PE=3 SV=1 gi\|161986493 - gi\|161986493\|ref\|YP_311230.2\| hypothetical protein SSON_2351 [Shigella sonnei Ss046] gi\|161950080 - gi\|161950080\|ref\|YP_404051.2\| hypothetical protein SDY_2490 [Shigella dysenteriae Sd197] gi\|168755048, gi... - gi\|189357702\|gb\|EDU76121.1\| YfbU domain protein [Escherichia coli O157:H7 str. EC4401], gi\|168755048... gi\|168748145, gi... - gi\|188017227\|gb\|EDU55349.1\| YfbU domain protein [Escherichia coli O157:H7 str. EC4113], gi\|168748145... gi\|168767922, gi... - gi\|189362810\|gb\|EDU81229.1\| YfbU domain protein [Escherichia coli O157:H7 str. EC4486], gi\|168767922... gi\|168761265, gi... - gi\|189368309\|gb\|EDU86725.1\| YfbU domain protein [Escherichia coli O157:H7 str. EC4501], gi\|168761265... gi\|189001898, gi... - gi\|189001898\|gb\|EDU70884.1\| YfbU domain protein [Escherichia coli O157:H7 str. EC4076], gi\|168780151... gi\|187771054, gi... - gi\|187771054\|gb\|EDU34898.1\| YfbU domain protein [Escherichia coli O157:H7 str. EC4196], gi\|168772978... YFBU_ECOL6 - UPF0304 protein YfbU OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yfbU PE=3 SV=... gi\|161367562 - gi\|161367562\|ref\|NP_288868.2\| hypothetical protein Z3555 [Escherichia coli O157:H7 EDL933] YFBU_ECO5E - UPF0304 protein YfbU OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yfbU PE=3 SV=1 gi\|208821633, gi... - gi\|208821633\|ref\|ZP_03261953.1\| YfbU domain protein [Escherichia coli O157:H7 str. EC4042], gi\|20874... gi\|217327308, gi... - gi\|217327308\|ref\|ZP_03443391.1\| YfbU domain protein [Escherichia coli O157:H7 str. TW14588], gi\|2173... YFBU_ECOSE - UPF0304 protein YfbU OS=Escherichia coli (strain SE11) GN=yfbU PE=3 SV=1 YFBU_ECO45 - UPF0304 protein YfbU OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=yfbU PE=3 SV=1 YFBU_ECO8A - UPF0304 protein YfbU OS=Escherichia coli O8 (strain IAI1) GN=yfbU PE=3 SV=1 YFBU_ECO55 - UPF0304 protein YfbU OS=Escherichia coli (strain 55989 / EAEC) GN=yfbU PE=3 SV=1 YFBU_ECO81 - UPF0304 protein YfbU OS=Escherichia coli O81 (strain ED1a) GN=yfbU PE=3 SV=1 gi\|168798466, gi... - gi\|189378911\|gb\|EDU97327.1\| YfbU domain protein [Escherichia coli O157:H7 str. EC508], gi\|168798466\|... gi\|168787203, gi... - gi\|189372908\|gb\|EDU91324.1\| YfbU domain protein [Escherichia coli O157:H7 str. EC869], gi\|168787203\|... YFBU_ECOL5 - UPF0304 protein YfbU OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=yfbU PE=3 SV=1 YFBU_ECOSM - UPF0304 protein YfbU OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=yfbU PE=3 SV=1 YFBU_ECODH - UPF0304 protein YfbU OS=Escherichia coli (strain K12 / DH10B) GN=yfbU PE=3 SV=1 gi\|195935672 - gi\|195935672\|ref\|ZP_03081054.1\| hypothetical protein EscherichcoliO157_04297 [Escherichia coli O157:... gi\|194433304, gi... - gi\|194433304\|ref\|ZP_03065584.1\| YfbU domain protein [Shigella dysenteriae 1012], gi\|194418398\|gb\|EDX... gi\|208733333, gi... - gi\|208812056\|ref\|ZP_03253385.1\| YfbU domain protein [Escherichia coli O157:H7 str. EC4045], gi\|20873... gi\|208729055, gi... - gi\|208809254\|ref\|ZP_03251591.1\| YfbU domain protein [Escherichia coli O157:H7 str. EC4206], gi\|20872...	1.0E-71	[1..164]	[1..164]
gi\|58177204, gi\|... - gi\|58177208\|pdb\|1WPB\|P Chain P, Structure Of Escherichia Coli Yfbu Gene Product, gi\|58177207\|pdb\|1WP...	1.0E-71	[1..164]	[9..172]
gi\|15832432, gi\|... - gi\|15832432\|ref\|NP_311205.1\| hypothetical protein ECs3178 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|73856288, gi\|... - gi\|74312811\|ref\|YP_311230.1\| hypothetical protein SSON_2351 [Shigella sonnei Ss046], gi\|73856288\|gb\|... gi\|81241850, gi\|... - gi\|82777702\|ref\|YP_404051.1\| hypothetical protein SDY_2490 [Shigella dysenteriae Sd197], gi\|81241850... gi\|15832432, gi\|... - gi\|15832432\|ref\|NP_311205.1\| hypothetical protein ECs3178 [Escherichia coli O157:H7], gi\|13362648\|db... gi\|209765026, gi... - gi\|7449733\|pir\|\|D65001 hypothetical protein b2294 - Escherichia coli (strain K-12), gi\|25324962\|pir\|... gi\|15802841, gi\|... - gi\|15802841\|ref\|NP_288868.1\| hypothetical protein Z3555 [Escherichia coli O157:H7 EDL933], gi\|125166... gi\|1788631, gi\|1... - gb\|AAC75354.1\| orf, hypothetical protein; conserved hypothetical protein [Escherichia coli K12], gi...	2.0E-71	[1..164]	[7..170]
gi\|115513608, gi... - gi\|117624484\|ref\|YP_853397.1\| hypothetical protein APECO1_4270 [Escherichia coli APEC O1], gi\|115513... gi\|91073162, gi\|... - gi\|91211588\|ref\|YP_541574.1\| hypothetical protein UTI89_C2576 [Escherichia coli UTI89], gi\|91073162\|... gi\|237704770, gi... - gi\|237704770\|ref\|ZP_04535251.1\| yfbU [Escherichia sp. 3_2_53FAA], gi\|226901136\|gb\|EEH87395.1\| yfbU [...	2.0E-71	[1..164]	[7..170]
gi\|24113666, gi\|... - gi\|24113666\|ref\|NP_708176.1\| hypothetical protein SF2370 [Shigella flexneri 2a str. 301], gi\|2405273... gi\|30063720, gi\|... - gi\|30063720\|ref\|NP_837891.1\| hypothetical protein S2505 [Shigella flexneri 2a str. 2457T], gi\|300419... YFBU_SHIFL - UPF0304 protein YfbU OS=Shigella flexneri GN=yfbU PE=3 SV=1	4.0E-71	[1..164]	[1..164]
gi\|238785673, gi... - gi\|77956853\|ref\|ZP_00820928.1\| COG3013: Uncharacterized conserved protein [Yersinia bercovieri ATCC ...	5.0E-71	[1..164]	[1..164]
YFBU_ECO24 - UPF0304 protein YfbU OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=yfbU PE=3 SV=1	9.0E-71	[1..164]	[1..164]
Y2563_YERPE - UPF0304 protein YPO2563/y1624/YP_2374 OS=Yersinia pestis GN=YPO2563 PE=3 SV=1 gi\|165914455, gi... - gi\|89105758\|ref\|ZP_01178272.1\| COG3013: Uncharacterized conserved protein [Yersinia pestis biovar Or... Y2053_YERPA - UPF0304 protein YPA_2053 OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=YPA_2053 PE=3 SV=1 gi\|167424618, gi... - gi\|167424618\|ref\|ZP_02316371.1\| YfbU domain protein [Yersinia pestis biovar Mediaevalis str. K197300... gi\|167422319, gi... - gi\|167422319\|ref\|ZP_02314072.1\| YfbU domain protein [Yersinia pestis biovar Orientalis str. MG05-102... Y1553_YERPY - UPF0304 protein YPK_1553 OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=YPK_1553 PE=3... gi\|167469098 - gi\|167469098\|ref\|ZP_02333802.1\| YfbU domain protein [Yersinia pestis FV-1] Y1445_YERP3 - UPF0304 protein YpsIP31758_1445 OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=Yp... Y2156_YERPN - UPF0304 protein YPN_2156 OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=YPN_2156 PE=3 SV=1 Y1823_YERPG - UPF0304 protein YpAngola_A1823 OS=Yersinia pestis bv. Antiqua (strain Angola) GN=YpAngola_A1823 PE=3... Y2689_YERPB - UPF0304 protein YPTS_2689 OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=YPTS_2689 PE=... gi\|161511358 - gi\|161511358\|ref\|NP_993702.2\| hypothetical protein YP_2374 [Yersinia pestis biovar Microtus str. 910... gi\|161484832 - gi\|161484832\|ref\|NP_668942.2\| hypothetical protein y1624 [Yersinia pestis KIM] gi\|165992692, gi... - gi\|166008310\|ref\|ZP_02229208.1\| YfbU domain protein [Yersinia pestis biovar Antiqua str. E1979001], ... gi\|165925582, gi... - gi\|165925582\|ref\|ZP_02221414.1\| YfbU domain protein [Yersinia pestis biovar Orientalis str. F1991016... gi\|167051515, gi... - gi\|167399011\|ref\|ZP_02304535.1\| YfbU domain protein [Yersinia pestis biovar Antiqua str. UG05-0454],... Y2594_YERPS - UPF0304 protein YPTB2594 OS=Yersinia pseudotuberculosis GN=YPTB2594 PE=3 SV=1 gi\|166213783, gi... - gi\|166213783\|ref\|ZP_02239818.1\| YfbU domain protein [Yersinia pestis biovar Antiqua str. B42003004],... gi\|115348260, gi... - gi\|218929649\|ref\|YP_002347524.1\| hypothetical protein YPO2563 [Yersinia pestis CO92], gi\|16122781\|re... gi\|229838106, gi... - gi\|229838106\|ref\|ZP_04458265.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... Y2594_YERPS - UPF0304 protein YPTB2594 OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=YPTB2594 PE=3... gi\|229895306, gi... - gi\|229895306\|ref\|ZP_04510480.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229701792\|gb\|EEO... gi\|229688215, gi... - gi\|229898667\|ref\|ZP_04513812.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... gi\|149365531, gi... - gi\|149365531\|ref\|ZP_01887566.1\| hypothetical protein YPE_0699 [Yersinia pestis CA88-4125], gi\|149291... Y1971_YERPP - UPF0304 protein YPDSF_1971 OS=Yersinia pestis (strain Pestoides F) GN=YPDSF_1971 PE=3 SV=1	1.0E-70	[1..164]	[1..164]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMTNAQRLI LSNQYKMMTM LDPTNAERYR RLQTIIERGY GLQMRELDRE FGELTEETCR  60
   61 TIIDIMEMYH ALHVSWTNLK DTQAIDERRV TFLGFDAATE ARYLGYVRFM VNIEGRYTHF 120
  121 DAGTHGFNAQ TPMWEKYQRM LNVWHACPRQ YHLSANEINQ IINA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.0
Match:	1wpbA
Description:	Structure of Escherichia coli yfbU gene product
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits