YRC Public Data Repository - Protein Structure Prediction

Protein:	ZAPB_SHIF8
Organism:	Shigella flexneri 5 str. 8401
Length:	81 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ZAPB_SHIF8.

Description	E-value	Query Range	Subject Range
gi\|75437401, gi\|... - gi\|75437401\|ref\|ZP_00733422.1\| conserved hypothetical protein [Actinobacillus succinogenes 130Z], gi...	98.0	[0..1]	[81..62]
gi\|90325401, gi\|... - gi\|90413628\|ref\|ZP_01221618.1\| hypothetical protein P3TCK_00365 [Photobacterium profundum 3TCK], gi\|...	89.0	[0..3]	[81..1]
gi\|238726269, gi... - gi\|77977394\|ref\|ZP_00832844.1\| COG3074: Uncharacterized protein conserved in bacteria [Yersinia inte... gi\|238760318, gi... - gi\|238760318\|ref\|ZP_04621460.1\| Cell division protein zapB [Yersinia aldovae ATCC 35236], gi\|2387014...	87.0	[0..3]	[81..1]
ZAPB_PHOPR - Cell division protein ZapB OS=Photobacterium profundum GN=zapB PE=3 SV=1 ZAPB_PHOPR - Cell division protein ZapB OS=Photobacterium profundum (strain SS9) GN=zapB PE=3 SV=1	87.0	[0..3]	[81..4]
gi\|77957392, gi\|... - gi\|77957392\|ref\|ZP_00821449.1\| COG3074: Uncharacterized protein conserved in bacteria [Yersinia berc... gi\|77961042, gi\|... - gi\|77961042\|ref\|ZP_00824890.1\| COG3074: Uncharacterized protein conserved in bacteria [Yersinia moll...	87.0	[0..3]	[81..1]
gi\|22123966, gi\|... - gi\|22123966\|ref\|NP_667389.1\| hypothetical protein y0045 [Yersinia pestis KIM], gi\|21956704\|gb\|AAM836... ZAPB_YERPE - Cell division protein ZapB OS=Yersinia pestis GN=zapB PE=3 SV=1 ZAPB_YERPS - Cell division protein ZapB OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=zapB PE=3 S... gi\|167051713, gi... - gi\|167399209\|ref\|ZP_02304733.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|45439960, gi\|... - gi\|45439960\|ref\|NP_991499.1\| hypothetical protein YP_0097 [Yersinia pestis biovar Microtus str. 9100... gi\|167418952, gi... - gi\|167418952\|ref\|ZP_02310705.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167055066, gi... - gi\|167425918\|ref\|ZP_02317671.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|16120442, gi\|... - gi\|218927310\|ref\|YP_002345185.1\| hypothetical protein YPO0093 [Yersinia pestis CO92], gi\|16120442\|re... gi\|167468540 - gi\|167468540\|ref\|ZP_02333244.1\| hypothetical protein YpesF_11724 [Yersinia pestis FV-1] ZAPB_YERPY - Cell division protein ZapB OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=zapB PE=3 S... ZAPB_YERPB - Cell division protein ZapB OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=zapB PE=3 SV... gi\|229842026, gi... - gi\|229842026\|ref\|ZP_04462181.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... gi\|229839944, gi... - gi\|229839944\|ref\|ZP_04460103.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|229836208, gi... - gi\|229836208\|ref\|ZP_04456376.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229706656\|gb\|EEO... ZAPB_YERP3 - Cell division protein ZapB OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=zapB PE... ZAPB_YERPG - Cell division protein ZapB OS=Yersinia pestis bv. Antiqua (strain Angola) GN=zapB PE=3 SV=1 ZAPB_YERPS - Cell division protein ZapB OS=Yersinia pseudotuberculosis GN=zapB PE=3 SV=1 gi\|165928401, gi... - gi\|165928401\|ref\|ZP_02224233.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|165989669, gi... - gi\|166011523\|ref\|ZP_02232421.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166213759, gi... - gi\|166213759\|ref\|ZP_02239794.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|149290255, gi... - gi\|150260847\|ref\|ZP_01917575.1\| hypothetical protein YPE_3171 [Yersinia pestis CA88-4125], gi\|149290... ZAPB_YERPP - Cell division protein ZapB OS=Yersinia pestis (strain Pestoides F) GN=zapB PE=3 SV=1 gi\|165915895, gi... - gi\|89103464\|ref\|ZP_01176041.1\| COG3074: Uncharacterized protein conserved in bacteria [Yersinia pest... ZAPB_YERPA - Cell division protein ZapB OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=zapB PE=3 SV=1 ZAPB_YERPN - Cell division protein ZapB OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=zapB PE=3 SV=1	86.0	[0..3]	[81..1]
gi\|77972975, gi\|... - gi\|77972975\|ref\|ZP_00828529.1\| COG3074: Uncharacterized protein conserved in bacteria [Yersinia fred...	86.0	[0..3]	[81..1]
ZAPB_ERWCT - Cell division protein ZapB OS=Erwinia carotovora subsp. atroseptica GN=zapB PE=3 SV=1 ZAPB_PECAS - Cell division protein ZapB OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) GN=zapB ...	83.0	[0..3]	[81..1]
gi\|89075181, gi\|... - gi\|89075181\|ref\|ZP_01161612.1\| hypothetical protein SKA34_00040 [Photobacterium sp. SKA34], gi\|89049...	82.0	[0..3]	[81..1]
ZAPB_PHOLL - Cell division protein ZapB OS=Photorhabdus luminescens subsp. laumondii (strain DSM 15139 / CIP 1055... ZAPB_PHOLL - Cell division protein zapB OS=Photorhabdus luminescens subsp. laumondii GN=zapB PE=3 SV=1	82.0	[0..3]	[81..1]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTMSLEVFEK LEAKVQQAID TITLLQMEIE ELKEKNNSLS QEVQNAQHQR EELERENNHL  60
   61 KEQQNGWQER LQALLGRMEE V

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.36
Match:	1d7mA
Description:	Coiled-coil dimerization domain from cortexillin I
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits